Table 1.
Chromosomal locus ID and length of CSLD proteins in cotton
| Organism | CSLD protein | Gene namea | Exon | Locus ID | Strand | Length |
|---|---|---|---|---|---|---|
| G.arboreum | Cotton_A_07355 | GaCSLD1 | 3 | Chr11:7526483-7529728 | + | 1006 |
| Cotton_A_05735 | GaCSLD2/3 | 2 | Chr3:41008,691-41012256 | − | 1160 | |
| Cotton_A_02861 | GaCSLD2/3 | 3 | Chr8:99437456-99441339 | + | 1144 | |
| Cotton_A_32285 | GaCSLD4 | 5 | Chr4:70165526-70169404 | − | 1144 | |
| Cotton_A_07935 | GaCSLD6 | 3 | Chr6:50169413-50173209 | − | 1104 | |
| Cotton_A_20715 | GaCSLD5 | 3 | Chr6:48564230-48568215 | + | 1175 | |
| G.hirsutum | CotAD_11457 | GhCSLD1 | 3 | Dt_Chr6:3724390-3727635 | − | 1006 |
| CotAD_67882 | GhCSLD1 | 3 | Scaffold3941.1:14327-17572 | − | 1006 | |
| CotAD_04035 | GhCSLD2/3 | 2 | Dt_chr5:12149740-12153305 | + | 1143 | |
| CotAD_56339 | GhCSLD2/3 | 2 | Scaffold2886.1:98206-101771 | + | 1143 | |
| CotAD_31893 | GhCSLD2/3 | 3 | At_chr8:11464660-11468543 | + | 1144 | |
| CotAD_24032 | GhCSLD2/3 | 3 | Dt_chr3:27558271-27562152 | + | 1144 | |
| CotAD_28379 | GhCSLD4 | 4 | Dt_chr12:6056272-6060210 | − | 1121 | |
| CotAD_17594 | GhCSLD6 | 3 | Dt_chr8:49809841:49813637 | + | 1104 | |
| CotAD_16292 | GhCSLD5 | 3 | Dt_chr8:38197719-38201702 | − | 1175 | |
| CotAD_41814 | GhCSLD6 | 3 | Dt_chr8:48706763-48710552 | − | 1104 | |
| CotAD_11976 | GhCSLD5 | 3 | Scaffold42.1:2430018-2434003 | + | 1175 | |
| G.raimondii | Gorai.006G220600.1 | GrCSLD1 | 3 | Chr06:47301257-47304509 | + | 968 |
| Gorai.004G257300.1 | GrCSLD2/3 b | 3 | Chr04:59350347-59355312 | + | 1143 | |
| Gorai.003G052200.1 | GrCSLD2/3 b | 4 | Chr03:7953077-7958739 | − | 1144 | |
| Gorai.012G137800.1 | GrCSLD4 | 4 | Chr12:31115815-31119908 | − | 1121 | |
| Gorai.008G142900.1 | GrCSLD5 | 3 | Chr08:39398378-39402804 | − | 1174 | |
| Gorai.008G223700.1 | GrCSLD6 | 4 | Chr08:51011238-51015956 | − | 1104 |
aGene names refer to the phylogenetic tree of CSLD proteins in Fig. 3
b CSLD2 and CSLD3 are designated CSLD2/3 because of two closely related isoforms in A. thaliana