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Comparison of imputation scores using vanilla SNP2HLA vs our method: the results are quite similar
| HLA (two-field) | Test population | D (ShapeIT/Impute2) | D (SNP2HLA) |
|---|---|---|---|
| HLA-A | 865 | 97.6 | 97.1 |
| HLA-B | 1495 | 96 | 94.9 |
| HLA-C | 813 | 95.8 | 95.9 |
| HLA-DRB1 | 800 | 87.9 | 87.8 |
| HLA-DQB1 | 974 | 94.8 | 96.4 |
