Table 5.
List of DEG transcripts between CK60 vs San Chi San associated with validated QTL confidence intervals detected using RNA-seq
| Gene id (v1.4) | Chr | Start | logFC | Annotation |
|---|---|---|---|---|
| Sb01g032720 | 1 | 55,657,279 | 4.48 | senescence-related gene 1 |
| Sb01g032990 | 1 | 56,004,806 | −6.49 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 |
| Sb01g033010 | 1 | 56,047,918 | 9.15 | UB-like protease 1A |
| Sb01g033090 | 1 | 56,202,769 | 4.51 | Mannose-binding lectin superfamily protein |
| Sb01g033360 | 1 | 56,595,053 | −5.01 | acetoacetyl-CoA thiolase 2 |
| Sb01g033510 | 1 | 56,844,396 | −3.37 | RING/U-box superfamily protein |
| Sb01g035040 | 1 | 58,570,198 | 3.77 | annexin 3 |
| Sb01g035710 | 1 | 59,334,810 | 8.66 | F-box/RNI-like/FBD-like domains-containing protein |
| Sb01g035910 | 1 | 59,529,076 | 9.33 | glutathione S-transferase THETA 3 |
| Sb01g036330 | 1 | 59,936,853 | −2.75 | Ribosomal protein L16p/L10e family protein |
| Sb01g037560 | 1 | 61,109,734 | 3.98 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein |
| Sb01g037730 | 1 | 61,307,485 | −2.94 | |
| Sb01g037940 | 1 | 61,514,738 | 7.80 | PYR1-like 6 |
| Sb01g038720 | 1 | 62,214,256 | −7.04 | lysine histidine transporter 1 |
| Sb01g039370 | 1 | 62,800,020 | 5.56 | Ankyrin repeat family protein |
| Sb01g039390 | 1 | 62,807,357 | −6.51 | heat shock cognate protein 70-1 |
| Sb01g041180 | 1 | 64,497,962 | −5.30 | heat shock protein 21 |
| Sb06g014250 | 6 | 39,313,831 | 4.94 | multidrug resistance-associated protein 9 |
| Sb06g014400 | 6 | 39,867,816 | −4.42 | heat shock protein 70 |
| Sb06g014450 | 6 | 39,970,615 | 3.70 | FAD-binding Berberine family protein |
| Sb06g014550 | 6 | 40,216,040 | 3.34 | senescence-related gene 1 |
| Sb06g015520 | 6 | 43,082,617 | 8.33 | B-block binding subunit of TFIIIC |
| Sb06g016020 | 6 | 44,422,691 | 2.67 | |
| Sb06g016043 | 6 | 44,460,095 | 7.30 | mediator subunit 8 |
| Sb06g016160 | 6 | 44,576,681 | 2.55 | seed storage 2S albumin superfamily protein |
| Sb06g016570 | 6 | 45,400,235 | 10.55 | tetraspanin3 |
| Sb07g021940 | 7 | 56,219,220 | 3.00 | PEP1 receptor 1 |
| Sb07g022320 | 7 | 56,757,993 | 5.98 | Cytochrome P450 superfamily protein |
| Sb07g023140 | 7 | 57,977,647 | 5.21 | Gibberellin receptor GID1L2 |
| Sb07g023220 | 7 | 58,087,984 | −3.46 | phospholipase A 2A |
| Sb07g023260 | 7 | 58,157,388 | −8.65 | tetraspanin9 |
| Sb07g023750 | 7 | 58,708,629 | 11.2 | |
| Sb07g023770 | 7 | 58,722,654 | 11.2 | rotamase cyclophilin 5 |
| Sb07g024200 | 7 | 59,189,842 | −7.60 | Ribosomal protein L1p/L10e family |
| Sb07g026735 | 7 | 61,850,599 | −5.10 | BTB-POZ and MATH domain 1 |
| Sb07g026825 | 7 | 61,987,674 | −4.46 | Pyridoxamine 5\’-phosphate oxidase family protein |
| Sb08g002210 | 8 | 2,325,578 | 7.19 | Protein of unknown function (DUF567) |
| Sb08g002590 | 8 | 2,673,615 | −2.69 | WRKY DNA-binding protein 55 |
| Sb08g003156 | 8 | 3,465,443 | 5.29 | |
| Sb08g003850 | 8 | 4,444,512 | 7.37 | RING/FYVE/PHD zinc finger superfamily protein |
| Sb09g018750 | 9 | 47,019,339 | 3.26 | Glycosyl hydrolase superfamily protein |
| Sb09g019880 | 9 | 48,871,032 | 7.33 | Microtubule associated protein (MAP65/ASE1) family protein |
| Sb09g020980 | 9 | 50,414,518 | 9.79 | Peroxidase superfamily protein |
| Sb09g021000 | 9 | 50,425,845 | 3.75 | Peroxidase superfamily protein |
| Sb09g021720 | 9 | 51,194,456 | −2.89 | histone deacetylase 8 |
| Sb09g022390 | 9 | 52,044,973 | 8.36 | Ribosomal protein S8 family protein |
| Sb09g022400 | 9 | 52,083,991 | −4.80 | cytochrome-c oxidases; electron carriers |
| Sb09g022580 | 9 | 52,235,414 | −2.69 | heat shock protein 70 |
| Sb09g025840 | 9 | 55,253,011 | −3.06 | Protein of unknown function (DUF506) |
| Sb09g025900 | 9 | 55,284,480 | −3.25 | heat shock protein 101 |
| Sb09g026440 | 9 | 55,716,410 | −2.64 | winged-helix DNA-binding transcription factor family protein |
| Sb09g027380 | 9 | 56,449,825 | −3.15 | Serine, threonine protein kinase, STT7 homolog STN7 |
| Sb09g027470 | 9 | 56,561,299 | 5.29 | Disease resistance protein (TIR-NBS-LRR class) family |
| Sb09g028960 | 9 | 57,721,281 | 4.34 | ribosomal protein, L13 |
| Sb09g029640 | 9 | 58,275,799 | −4.87 | Rad21/Rec8-like family protein |
Chr, chromosome number; Log2 ratio; number of folds the gene is differentially expressed in RNA-seq. Positive sign indicates gene transcript expressed high in CK60
ns, indicate the gene is not differentially expressed between CK60 and San Chi San