Table 6.
List of DEG transcripts between bulks of RILs with low vs high NUE associated with validated QTL confidence intervals detected using RNA-seq
| Gene id (v1.4) | Chr | Start | logFC | Annotation |
|---|---|---|---|---|
| Sb01g033980 | 1 | 57,393,170 | 7.57 | Ribosomal protein S4 |
| Sb01g034150 | 1 | 57,603,650 | 1.56 | Amino acid permease family protein |
| Sb01g034700 | 1 | 58,128,360 | 1.36 | terpene synthase 21 |
| Sb01g038720 | 1 | 62,214,256 | −4.04 | lysine histidine transporter 1 |
| Sb01g039690 | 1 | 63,184,945 | 2.5 | laccase 17, nitrite reductase (NiR) |
| Sb06g014550 | 6 | 40,216,040 | 1.80 | senescence-related gene 1 |
| Sb06g015880 | 6 | 43,936,495 | 1.51 | Xyloglucan endotransglucosylase/hydrolase family protein |
| Sb06g018490 | 6 | 48,086,361 | 2.40 | UDP-glucosyl transferase 85A2 |
| Sb07g023600 | 7 | 58,479,475 | 5.86 | |
| Sb07g023602 | 7 | 58,483,111 | 7.10 | |
| Sb07g023605 | 7 | 58,484,711 | 8.09 | |
| Sb07g028110 | 7 | 63,104,949 | 1.52 | Calcium-binding EF-hand family protein |
| Sb08g001780 | 8 | 1,755,888 | 1.43 | early nodulin-like protein 18 |
| Sb08g003110 | 8 | 3,380,820 | 2.40 | cytochrome P450, family 94, subfamily C, polypeptide 1 |
| Sb08g006800 | 8 | 11,128,291 | 1.92 | receptor like protein 7 |
| Sb08g015850 | 8 | 42,032,993 | −4.74 | Zinc finger C-×8-C-×5-C-×3-H type family protein |
| Sb09g018750 | 9 | 47,019,339 | 2.77 | Glycosyl hydrolase superfamily protein |
| Sb09g020980 | 9 | 50,414,518 | 2.47 | Peroxidase superfamily protein |
| Sb09g021000 | 9 | 50,425,845 | 2.11 | Peroxidase superfamily protein |
| Sb09g023910 | 9 | 53,527,963 | 6.13 | Nucleic acid-binding, OB-fold-like protein |
Chr, chromosome number; Log2 ratio; number of folds the gene is differentially expressed in RNA-seq. Positive sign indicates gene transcript expressed high in low NUE RIL bulk
ns, indicate the gene is not differentially expressed between low and high NUE RIL bulks