Table 1.

Quality analyses of the digital gene expression profiling library of follicles tissue in Large white and Mi gilts at estrus and diestrus¹.

Items	LD	LE	MD	ME
Raw Reads	57,434,498	58,294,608	56,257,632	57,417,062
Clean Reads (%2)	54,936,961	56,007,603	54,394,534	56,015,413
	(95.63%)	(96.09%)	(96.70%)	(97.56%)
Adapter Polluted Reads (%)	1,271,411	1,098,098	905,188	736,364
	(2.24%)	(1.87%)	(1.61%)	(1.29%)
Ns Reads (%)	20,345	22,398	40,996	67,644
	(0.03%)	(0.04%)	(0.08%)	(0.12%)
Low-quality Reads (%)	1,205,779	1,166,507	916,912	597,639
	(2.10%)	(2.00%)	(1.62%)	(1.04%)
Clean Q30 Bases Rate (%)	88.25	87.87	91.65	95.68
Mapped Reads (%)	42,460,339	44,601,507	42,932,065	45,122,743
	(77.33%)	(79.63%)	(78.93%)	(80.55%)
Multi Map Reads (%3)	2,407,266	2,658,098	2,547,627	2,531,558
	(4.33%)	(5.00%)	(5.00%)	(4.67%)

¹LD, Large white gilts at diestrus; LE, Large white gilts at estrus; MD, Mi gilts at diestrus; ME, Mi gilts at estrus.

²The number of clean reading frames of total raw reading frames.

³The number of all mapped reads out of total clean reads. Q30 represents an error rate of less than 0.001.