Table 2.
Putative QTL associated with seed germination under cold stress in the BRIL population in rice.
| Traits | QTL | Chr.a | Left Marker (physical position) | Right Marker (physical position) | LODb | ADDc | PVE (%)d |
|---|---|---|---|---|---|---|---|
| Seventh day under cold stress | qCGR8 | 8 | bin 8-28 (2,820,000) | bin 8-29 (2,860,000) | 5.74 | 0.08 | 20.71 |
| Eighth day after cold stress | qNGR1 | 1 | bin 1-314 (41,100,000) | bin 1-315 (41,140,000) | 2.52 | -0.05 | 6.31 |
| qNGR4 | 4 | bin 4-289 (35,060,000) | bin 4-290 (35,100,000) | 4.42 | -0.05 | 10.43 | |
| Seed germination recovery rate | qGRR1 | 1 | bin 1-218 (29,140,000) | bin 1-219 (29,280,000) | 4.33 | -0.07 | 11.93 |
| qGRR8 | 8 | bin 8-53 (5,500,000) | bin 8-54 (5,620,000) | 7.84 | -0.1 | 23.33 | |
| qGRR11 | 11 | bin 11-198 (25,500,000) | bin 11-199 (25,540,000) | 3.78 | 0.09 | 11.08 |
aChr., chromosome.
bLOD, logarithm of odds.
cADD, Additive effect; a positive value indicates superiority of the japonica 02428.
dPVE (%), percent of variance explained (%).