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. 2016 Aug 18;59(11):2393–2405. doi: 10.1007/s00125-016-4074-5

Table 6.

Differentially expressed genes accompanied by DMS in VAT between insulin-resistant and insulin-sensitive womena

Probe Gene Relation to gene region DNA methylation Gene expression
IR IS IR − IS p value IS IR/IS p value
cg17174775 AASS TSS1500 0.016 0.039 0.027 0.033 −0.011 0.0022 118 0.88 0.000121
cg09711028 ABCC9 Body 0.913 0.041 0.897 0.046 0.016 0.033 391 0.86 0.000303
cg16236108 AGPAT9 TSS200 0.062 0.042 0.076 0.04 −0.014 0.027 89 0.78 7.62 × 10−6
cg14229247b ANP32B TSS1500 0.04 0.048 0.048 0.046 −0.009 0.038 237 0.91 3.61 × 10−5
cg08400424b ARHGAP26 Body 0.55 0.1 0.597 0.103 −0.047 0.028 109 1.16 2.33 × 10−5
cg05185926 ARHGAP26 3′UTR 0.712 0.101 0.75 0.121 −0.038 0.025 109 1.16 2.33 × 10−5
cg11796181b ARHGAP26 Body 0.754 0.043 0.708 0.047 0.046 0.00017 109 1.16 2.33 × 10−5
cg12264626 CA3 TSS1500 0.183 0.054 0.162 0.095 0.021 0.036 242 0.45 0.000136
cg00908631 CDKN2C TSS1500 0.668 0.052 0.632 0.06 0.036 0.0011 134 0.82 0.000184
cg10156302 DAPK2 Body 0.605 0.091 0.552 0.111 0.053 0.01 171 0.86 0.000235
cg23165541 DAPK2 5′UTR 0.403 0.094 0.363 0.09 0.039 0.014 171 0.86 0.000235
cg06904649 DAPK2 Body 0.767 0.037 0.744 0.043 0.022 0.043 171 0.86 0.000235
cg16151151 ISL1 Body 0.196 0.069 0.172 0.095 0.024 0.016 99 0.8 0.000045
cg17686487 ISL1 Body 0.434 0.082 0.395 0.089 0.039 0.012 99 0.8 0.000045
cg16270526 ISL1 Body 0.225 0.069 0.185 0.077 0.04 0.023 99 0.8 0.000045
cg26422022 LOX TSS200 0.032 0.039 0.039 0.036 −0.007 0.040419 169 1.22 9.74 × 10−5
cg22836153 LOX Body 0.057 0.038 0.065 0.033 −0.008 0.042 169 1.22 9.74 × 10−5
cg03422350 MOCS1 Body 0.722 0.068 0.68 0.071 0.042 0.031 205 0.79 9.42 × 10−5
cg10791278 MOCS1 Body 0.782 0.056 0.737 0.061 0.045 0.0016 205 0.79 9.42 × 10−5
cg06023702 PAIP2B TSS200 0.029 0.043 0.04 0.041 −0.011 0.018 114 0.85 5.02 × 10−5
cg06241044 PAIP2B 5′UTR 0.265 0.052 0.242 0.066 0.023 0.038 114 0.85 5.02 × 10−5
cg22999327 PDE3A Body 0.53 0.105 0.485 0.124 0.045 0.028 133 0.82 1.19 × 10−5
cg02631767 PDE3A Body 0.875 0.056 0.857 0.058 0.018 0.048 133 0.82 1.19 × 10−5
cg04857033 PHGDH Body 0.376 0.078 0.336 0.089 0.04 0.049 135 0.88 0.00039
cg26166935 PHLPP1 Body 0.857 0.039 0.837 0.037 0.02 0.03 101 0.91 0.000203
cg03299121 PNO1 TSS200 0.055 0.044 0.064 0.041 −0.01 0.0003 53 1.08 0.000385
cg06123940 RNF125 TSS1500 0.798 0.044 0.785 0.043 0.012 0.029 109 0.88 0.0004
cg18101249 RNF125 Body 0.082 0.049 0.089 0.037 −0.006 0.046 109 0.88 0.0004
cg13849419 TJP2 Body 0.509 0.095 0.468 0.106 0.041 0.043 179 0.93 0.000239

DNA methylation data are expressed as average (SD); gene expression data are expressed as average

aDifferentially expressed genes (10% FDR) accompanied by DMS (p < 0.05) in VAT between insulin-resistant and insulin-sensitive women. Groups were compared using Limma and adjusting for BMI (gene expression, DMS) and age (DMS)

bDMS and differentially expressed gene common to SAT and VAT