Fig 2. Annotation and distribution of SNPs and InDels between common wild rice lines and Nipponbare reference genome.

SNPs, insertions and deletions on the rice pseudomolecules were classified as genic and intergenic regions, and locations within the gene models were annotated. The number of SNPs, insertions and deletions in each class is shown. A and B indicate the distributions of SNPs and InDels in the comparisons of Huaye 1 and Nipponbare reference genome, and Huaye 2 and Nipponbare reference genome, respectively.