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| Variant Detected | Variant not detected | ||||
|---|---|---|---|---|---|
| True Positive (TP) | 409 | SNV: HET | 234 | False Negative (FN) | 0 |
| SNV: HOM | 153 | ||||
| Indels: HET (1–40 bp) | 22 | ||||
| False Positives (FP) | 0 | True Negative (TN)* | 603737 | ||
*TN = Size of ROI (17769 bp) x Total Samples (34)—Total True positives in all samples
