Table 3.
GO term enrichment in the circadian gene clusters.
| Arabidopsis thaliana | Ostreococcus tauri | Chlamydomonas reinhardtii | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Size | Enriched GO terms | Genes | Size | Enriched GO terms | Genes | Size | Enriched GO terms | Genes | |
| Peak dawn | 0 | 422 | Protein catabolic process | ostta11g00020 | 1,426 | Carboxylic acid metabolic process | Cre16.g687350 | ||
| Trough dawn | Transcription from RNA polymerase II promoter | ostta14g01300 | Cellular amino acid metabolic process | Cre01.g029250 | |||||
| Peak dawn | 1,209 | Carbohydrate catabolic process | AT4G17090 | 1,384 | RNA metabolic process | ostta10g00100 | 1,801 | Ribosome biogenesis | Cre13.g573050 |
| Trough day | Monocarboxylic acid metabolic process | AT4G25700 | Ribosome biogenesis | ostta06g01560 | RNA metabolic process | Cre01.g012350 | |||
| Peak dawn | 811 | Response to auxin | AT1G29440 | 1,744 | Tetrapyrrole metabolic process | ostta17g00130 | 2,869 | Tetrapyrrole metabolic process | Cre06.g306300 |
| Trough dusk | Carbohydrate biosynthetic process | AT1G70290 | Carbohydrate catabolic process | ostta01g03040 | Carbohydrate catabolic process | Cre01.g006950 | |||
| Peak dawn | 132 | Regulation of transcription | AT5G62430 | 739 | Protein localization to membrane | ostta03g05390 | 1,212 | Protein targeting to ER | Cre16.g683950 |
| Trough night | Organic cyclic compound metabolic process | AT1G20330 | Nucleotide metabolic process | ostta15g00150 | Cyclic nucleotide metabolic process | Cre02.g074150 | |||
| Peak day | 980 | DNA replication | AT4G02060 | 997 | DNA metabolic process | ostta03g03780 | 1,987 | Protein catabolic process | Cre12.g531100 |
| Trough dawn | Actin cytoskeleton organization | AT1G13180 | Establishment of localization | ostta02g01890 | Golgi vesicle transport | Cre10.g447350 | |||
| Peak day | 127 | 141 | Protein localization to membrane | ostta01g00410 | 256 | Peptide biosynthetic process | Cre10.g421600 | ||
| Trough day | Response to stress | ostta08g03450 | Vitamin metabolic process | Cre02.g090150 | |||||
| Peak day | 222 | Tricarboxylic acid metabolic process | AT5G04950 | 514 | Tetrapyrrole biosynthetic process | ostta02g02380 | 962 | Photosynthesis | Cre10.g425900 |
| Trough dusk | Isoprenoid metabolic process | AT4G15560 | Photosynthesis | ostta14g00150 | Tetrapyrrole biosynthetic process | Cre06.g306300 | |||
| Peak day | 935 | Photosynthesis | AT4G10340 | 1,060 | Signal transduction | ostta04g01810 | 1,467 | Photosynthesis | Cre16.g673650 |
| Trough night | Ribosome biogenesis | AT5G16750 | DNA replication | ostta01g02580 | Carbohydrate derivative | Cre12.g508700 | |||
| Photosynthesis | ostta14g00150 | Biosynthetic process | |||||||
| Peak dusk | 907 | DNA metabolic process | AT2G42120 | 1,620 | DNA metabolic process | ostta02g00690 | 3,751 | DNA metabolic process | Cre01.g017450 |
| Trough dawn | Carbohydrate catabolic process | AT2G32290 | Carbohydrate metabolic process | ostta05g04330 | Carbohydrate biosynthetic process | Cre12.g508700 | |||
| Peak dusk | 432 | Vitamin metabolic process | AT2G29630 | 437 | Microtubule-based process | ostta10g00680 | 1,573 | Mitotic cell cycle | Cre02.g086650 |
| Trough day | Peroxisome organization | AT1G47750 | Microtubule-based process | Cre10.g456350 | |||||
| Peak dusk | 196 | Peptide biosynthetic process | AT4G29430 | 696 | Vesicle-mediated transport | ostta09g03760 | 882 | Vesicle-mediated transport | Cre02.g087551 |
| Trough night | DNA replication | ostta04g04640 | Chromatin organization | Cre16.g668200 | |||||
| Peak nightt | 122 | Hexose metabolic process | AT1G24280 | 540 | RNA processing | ostta11g03270 | 1,488 | Phosphorylation | Cre10.g423200 |
| Trough dawn | Protein modification process | ostta11g02830 | Nucleotide biosynthetic process | Cre13.g606250 | |||||
| Peak night | 1,014 | Dephosphorylation | AT1G71860 | 1,234 | Ribosome biogenesis | ostta09g00820 | 1,479 | Protein metabolic process | Cre01.g035500 |
| Trough day | Autophagy | AT3G60640 | Vitamin metabolic process | ostta09g00820 | Regulation of cellular process | Cre12.g489000 | |||
| Peak night | 177 | Hexose metabolic process | AT5G35790 | 689 | Gene expression | ostta18g01220 | 951 | Protein metabolic process | Cre01.g001400 |
| Trough dusk | Response to stimulus | AT1G10470 | Peptide biosynthetic process | ostta02g01970 | Signal transduction | Cre13.g571200 | |||
| Peak night Trough night | 3 | 60 | L-serine metabolic process | ostta12g03060 | 57 | Cellular respiration | Cre13.g568800 | ||