Table 4.
Health status | Phylum | Order | Family | Genus | Log(LDA) |
---|---|---|---|---|---|
Healthy (unaffected and pre-infection) | Actinobacteria | Bifidobacteriales | Bifidobacteriaceae | Bifidobacterium | 3.74 |
Bacteroidetes | Bacteroidales | Rikenellaceae | Unknown | 4.45 | |
Other | 2.40 | ||||
Firmicutes | Clostridiales | unknown | Unknown | 4.49 | |
Mogibacteriaceae | Anaerovorax | 3.22 | |||
Gracilibacteraceae | Unknown | 3.68 | |||
Lachnospiraceae | Butyrivibrio | 2.97 | |||
Other | 3.66 | ||||
Proteobacteria | Aeromondales | Succinivibrionaceae | Succinivibrio | 2.79 | |
Verrucomicrobia | Verrucomicrobiales | Verrucomicrobiaceae | Akkermansia | 3.40 | |
Infection | Firmicutes | Lactobacillales | Enterococcaceae | Enterococcus | 3.06 |
Turicibacterales | Turicibacteraceae | Turibacter | 2.47 | ||
Clostridiales | Peptococcaceae | Unknown | 2.39 | ||
Other | Other | 3.14 | |||
Proteobacteria | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | 3.65 | |
Enterbacteriales | Enterbacteriaceae | Unknown | 3.83 | ||
Recovery | Bacteroidetes | Bacteroidales | Unknown | Unknown | 4.35 |
Firmicutes | Clostridiales | Clostridiaceae | Unknown | 3.46 | |
Lachnospiraceae | Unknown | 4.28 | |||
Erysipelotrichales | Erysipelotrichaceae | Coprobacillus | 3.06 |
Significance values are p < 0.01 for all taxa.