Table 1.
Gene Essentiality and Genome Size of Selected Species
Species | Genome Size (Mb) | Protein Coding Genes | Genes Contributing to Normal Growth | % | Assay | Method | Reference |
---|---|---|---|---|---|---|---|
S. cerevisiae | 12.1 | 5,916 | 1,105 essential | 34.9 | competitive growth in rich medium | barcoded mutants quantified on nucleotide arrays | Giaever et al., 2002, Deutschbauer et al., 2005 |
962 slow | |||||||
Trypanosoma brucei | 35.0 | 7,500 | 2,745 | 36.6 | 6-day extracellular blood stream forms in vitro | RNA interference | Alsford et al., 2011 |
Toxoplasma gondii | 63.0 | 8,158 | 3,263b | 40.0 | intracellular tachyzoites in cultured fibroblasts | CRISPR gRNA screen | Sidik et al., 2016 |
P. berghei | 18.5 | 4,616a | 2,123b essential | 62.9b | relative asexual intraerythrocytic growth in vivo | BarSeq | this study |
803b slow |
Core genome according to Otto et al. (2014).
Extrapolated from the covered genome.