Table 4.
Association analysis of miRNAs, genes and protein species responsive to salt stress in radish.
| miRNA | LogFCa | Gene/transcript ID | LogFCb | Protein ID | LogFCc | Description |
|---|---|---|---|---|---|---|
| miR156a | 0.43 | gi|332778243 | −1.42 | Rsa1.0_02678.1_g00001.1 | – | Glutamine synthetase |
| miR156a | 0.43 | CL13383.Contig1_NAU-YH | −3.39 | Rsa1.0_01634.1_g00012.1 | 0.10 | Pentatricopeptide repeat-containing protein |
| miR156a | 0.43 | Unigene29157_NAU-YH | −1.26 | Rsa1.0_00031.1_g00014.1 | – | Transducin/WD40 domain-containing protein |
| miR157a | 0.33 | CL8020.Contig3_NAU-YH | −1.27 | CL11389.Contig1_NAU-YH | – | Pentatricopeptide repeat-containing protein |
| miR157a | 0.33 | Unigene18175_NAU-YH | −1.62 | Rsa1.0_00031.1_g00014.1 | – | Transducin/WD40 domain-containing protein |
| miR165a | −1.44 | gi|167430480 | 2.12 | CL2529.Contig2_NAU-LB | −0.41 | S-adenosylmethionine-dependent methyltransferase domain-containing protein |
| miR165a-3p | 1.73 | Unigene27908_NAU-YH | −0.98 | Rsa1.0_00807.1_g00004.1 | −0.34 | Argininosuccinate synthase |
| miR171a | −2.40 | CL8220.Contig1_NAU-YH | 2.07 | CL4933.Contig2_NAU-LB | 0.04 | Dehydrin ERD10 |
| miR394a | 1.72 | gi|166138564 | −9.57 | CL3092.Contig1_CKA | 0.45 | Ankyrin repeat-containing protein |
| miR394a | 1.72 | CL4582.Contig2_NAU-YH | −9.92 | Unigene2355_CKA | – | Mitochondrial substrate carrier family protein |
| miR394b-3p | 1.06 | Unigene18175_NAU-YH | −1.62 | Rsa1.0_00031.1_g00014.1 | – | Transducin/WD40 domain-containing protein |
| miR395a | −8.61 | Unigene12970_NAU-YH | 1.07 | CL928.Contig2_CKA | – | ATP sulfurylase 1 |
| miR396a | 0.89 | Unigene21235_NAU-YH | −1.47 | Rsa1.0_01883.1_g00004.1 | – | Glycosyl hydrolase family 38 protein |
| miR396a | 0.89 | Unigene26024_NAU-YH | −2.58 | Rsa1.0_01809.1_g00003.1 | – | RabGAP/TBC domain-containing protein |
| miR398b-3p | −1.94 | CL4612.Contig2_NAU-YH | 1.70 | Unigene8101_NAU-LB | −0.01 | Cu/Zn superoxide dismutase |
| miR408-5p | −1.17 | gi|156153802 | −5.16 | Rsa1.0_00694.1_g00015.1 | −0.13 | Peptide chain release factor 1 |
| miR414 | −10.89 | gi|161565681 | 4.49 | Unigene26009_NAU-YH | 0.09 | Pentatricopeptide repeat-containing protein |
LogFCaRefers to the fold change of differentially expressed miRNAs in radish under 200 mM NaCl for 48 h compared to control (0 mM NaCl, CK), and the formula follows as: Fold change = log2(Na200/CK) (Sun et al., 2016).
LogFCbRefers to the fold change of differentially expressed genes under same conditions (Sun et al., 2015).
LogFCcRefers to the fold change of differentially expressed proteins under same conditions in this study.