FIG. 3.

BiSNN-Walk clusters compared to ground truths. x-Axis are the BiSNN-Walk clusters, and y-axis ground truth. The value in each grid represents the percentage of ground truth cluster that is in the BiSNN-Walk cluster. For example, in mouse data, the BiSNN-Walk cluster “Zy & 2e” contains all zygote and early-2-cell stage cells, thus the values in grids (“Zy & 2e,” “zy”) and (“Zy & 2e,” “2.e”) are both as follows. 1. The distinct diagonal pattern for all three data sets indicates that the ground truth was well recovered by BiSNN-Walk clusters.