Table 1. Phylogeographic analysis of 26 isolates of Burkholderia pseudomallei from the Western Hemisphere by whole-genome sequencing*.
Isolate | GenBank accession no. | Origin | Patient travel or residence | Year isolated | MLST type | ITS type |
---|---|---|---|---|---|---|
7894 | CP018373,CP018374 | Ecuador | Unknown | 1960 | 11 | G |
724644 | CP018377,CP018378,CP018379 | Massachusetts, USA | Aruba | 2012 | 698 | G |
CA2007 | CP018418,CP018419 | California, USA | Unknown | 2007 | 518 | G |
CA2009 | CP018380,CP018381 | California, USA | Mexico | 2009 | 95 | G |
CA2010 | CP018382,CP018383 | California, USA | Unknown | 2010 | 550 | C |
CA2013a | CP018398,CP018399 | California, USA | Unknown | 2013 | 518 | G |
FL2012 | CP018391,CP018392 | Florida, USA | Trinidad | 2012 | 297 | G |
GA2015 | CP018416,CP018417 | Georgia, USA | Panama and Peru | 2015 | 436 | G |
IL2014 | CP018414,CP018415 | Illinois, USA | Mexico | 2014 | 92 | G |
MD2013 | MPSL01000000 | Maryland, USA | Africa | 2013 | 1053 | C |
MX2013 | CP018395,CP018396,CP018397 | California, USA | Mexico and Vietnam | 2013 | 297 | G |
MX2014 | CP018410,CP018411 | California, USA | Mexico | 2014 | 951 | G |
NY2010 | CP018384,CP018385,CP018386 | New York, USA | Aruba | 2010 | 698 | G |
OH2013 | CP018400,CP018401 | Ohio, USA | None | 2013 | 17 | CE |
PB 1007001 | CP018387,CP018388 | Arizona, USA | Costa Rica | 2009 | 518 | G |
PR1982 | CP018367,CP018368 | Puerto Rico, USA | Unknown | 1982 | NA | G |
PR1998 | CP018369,CP018370 | Puerto Rico, USA | Unknown | 1998 | 92 | G |
PR2012 | CP018393,CP018394 | Puerto Rico, USA | Unknown | 2012 | 297 | G |
PR2013a | CP018406,CP018407 | Puerto Rico, USA, soil 1 | None | 2013 | 297 | G |
PR2013b | CP018408,CP018409 | Puerto Rico, USA, soil 2 | None | 2013 | 297 | G |
RI2013a | CP018402,CP018403 | Rhode Island, USA | Guatemala | 2013 | 1038 | G |
RI2013b | CP018404,CP018405 | Rhode Island, USA | Guatemala | 2013 | 1038 | G |
Swiss2010 | CP018389,CP018390 | Switzerland | Martinique | 2010 | 92 | G |
TX2004 | CP018375,CP018376 | Texas, USA | Southeast Asia | 2004 | 297 | G |
TX2015 | CP018412,CP018413 | Texas, USA | Mexico | 2015 | 92 | G |
VEN1976 | CP018371,CP018372 | Venezuela | Unknown | 1976 | 12 | G |
*ITS, internal transcribed spacer; MLST, multilocus sequence typing; NA, not available (allele for gltB was not resolvable by conventional Sanger sequencing or whole-genome analysis).