Skip to main content
. 2017 Jul;23(7):1133–1138. doi: 10.3201/eid2307.161978

Table 1. Phylogeographic analysis of 26 isolates of Burkholderia pseudomallei from the Western Hemisphere by whole-genome sequencing*.

Isolate GenBank accession no. Origin Patient travel or residence Year isolated MLST type ITS type
7894 CP018373,CP018374 Ecuador Unknown 1960 11 G
724644 CP018377,CP018378,CP018379 Massachusetts, USA Aruba 2012 698 G
CA2007 CP018418,CP018419 California, USA Unknown 2007 518 G
CA2009 CP018380,CP018381 California, USA Mexico 2009 95 G
CA2010 CP018382,CP018383 California, USA Unknown 2010 550 C
CA2013a CP018398,CP018399 California, USA Unknown 2013 518 G
FL2012 CP018391,CP018392 Florida, USA Trinidad 2012 297 G
GA2015 CP018416,CP018417 Georgia, USA Panama and Peru 2015 436 G
IL2014 CP018414,CP018415 Illinois, USA Mexico 2014 92 G
MD2013 MPSL01000000 Maryland, USA Africa 2013 1053 C
MX2013 CP018395,CP018396,CP018397 California, USA Mexico and Vietnam 2013 297 G
MX2014 CP018410,CP018411 California, USA Mexico 2014 951 G
NY2010 CP018384,CP018385,CP018386 New York, USA Aruba 2010 698 G
OH2013 CP018400,CP018401 Ohio, USA None 2013 17 CE
PB 1007001 CP018387,CP018388 Arizona, USA Costa Rica 2009 518 G
PR1982 CP018367,CP018368 Puerto Rico, USA Unknown 1982 NA G
PR1998 CP018369,CP018370 Puerto Rico, USA Unknown 1998 92 G
PR2012 CP018393,CP018394 Puerto Rico, USA Unknown 2012 297 G
PR2013a CP018406,CP018407 Puerto Rico, USA, soil 1 None 2013 297 G
PR2013b CP018408,CP018409 Puerto Rico, USA, soil 2 None 2013 297 G
RI2013a CP018402,CP018403 Rhode Island, USA Guatemala 2013 1038 G
RI2013b CP018404,CP018405 Rhode Island, USA Guatemala 2013 1038 G
Swiss2010 CP018389,CP018390 Switzerland Martinique 2010 92 G
TX2004 CP018375,CP018376 Texas, USA Southeast Asia 2004 297 G
TX2015 CP018412,CP018413 Texas, USA Mexico 2015 92 G
VEN1976 CP018371,CP018372 Venezuela Unknown 1976 12 G

*ITS, internal transcribed spacer; MLST, multilocus sequence typing; NA, not available (allele for gltB was not resolvable by conventional Sanger sequencing or whole-genome analysis).