Antibodies |
Anti-mouse CD3e Biotin |
TONBO |
30-0031 |
Anti-mouse CD4 Biotin |
Biolegend |
100404 |
Anti-mouse CD8 Biotin |
Biolegend |
100704 |
Anti-mouse CD19 Biotin |
TONBO |
30-0193 |
Anti-mouse B220 Biotin |
TONBO |
30-0452 |
Anti-mouse CD11b Biotin |
TONBO |
30-0112 |
Anti-mouse Gr1 Biotin |
TONBO |
30-5931 |
Anti-mouse CD11c Biotin |
TONBO |
30-0114 |
Anti-mouse Ter119 Biotin |
TONBO |
30-5921 |
Anti-mouse CD49b Biotin |
eBioscience |
13-5971 |
Anti-mouse ICOS |
Biolegend |
117405 |
Anti-mouse CD90.2 |
BD |
553007 |
Anti-mouse CD25 |
BD |
557658 |
Anti-mouse Sca1 |
BD |
560653 |
Anti-mouse CD45.2 |
TONBO |
80-0454 |
Anti-mouse ST2 |
eBioscience |
46-9335 |
Anti-mouse CD127 |
TONBO |
60-1271 |
Anti-mouse Ki67 |
Biolegend |
652403 |
Anti-mouse IL-4 |
BD |
564004 |
Anti-mouse IL-5 |
BD |
562048 |
Anti-mouse IL-13 |
eBioscience |
25-7133 |
Anti-mouse Gata3 |
eBioscience |
50-9966 |
Anti-mouse CXCR6 |
R & D |
FAB2145P |
Anti-mouse LPAM-1 |
BD |
562376 |
Anti-mouse PLZF |
Sant Cruz Biotechnology |
Sc-28319 |
Anti-mouse CD117 |
Biolegend |
105824 |
Anti-mouse Rorgt |
eBioscience |
12-6988 |
Anti-mouse CD117 |
eBioscience |
47-1172 |
Anti-mouse CCR6 |
Biolegend |
129818 |
Anti-mouse CD335 |
BD |
560800 |
Anti-mouse Ly6D |
Biolegend |
138603 |
Anti-mouse Flt3 |
eBioscience |
17-1351 |
Anti-mouse CD150 |
Biolegend |
115925 |
Anti-mouse Sca1 |
BD |
561229 |
Anti-mouse B220 |
TONBO |
65-0452 |
Anti-mouse CD19 |
BD |
552854 |
Anti-mouse CD4 |
Biolegend |
100528 |
Anti-mouse CD8 |
BD |
553033 |
Anti-mouse CD25 |
Biolegend |
102033 |
Anti-mouse CD44 |
BD |
559250 |
Streptavidin BV650 |
BD |
563855 |
Bacterial and Virus Strains |
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Biological Samples |
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Chemicals, Peptides, and Recombinant Proteins |
Recombinant Murine SCF |
PeproTech |
250-03 |
Recombinant Murine IL-7 |
PeproTech |
217-17 |
Recombinant Murine flt3-Ligand |
PeproTech |
250-31L |
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Critical Commercial Assays |
Lung Dissociation Kit |
Miltenyi Biotec |
130-095-927 |
BD BrdU flow kit |
BD Biosciences |
552598 |
Foxp3/Transcription Factor Staining Buffer Kit |
TONBO |
TNB-0607-KIT |
Intracellular Fixation & Permeabilization Buffer Set |
eBioscience |
88-8824-00 |
RNeasy-Micro Kit |
Qiagen |
74004 |
SMARTer Ultra Low Input RNA kit for Sequencing-v3 |
Clontech |
CLN 634848 |
Low Input Library Prep Kit |
Clontech |
CLN634947 |
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Deposited Data |
RNA-seq and ATAC-seq |
This paper |
GEO:GSE95339
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ATAC-seq |
Shih et al., 2016 |
GEO:GSE77695
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Experimental Models: Cell Lines |
Mouse: Tst-4-DL1 stroma cells |
Miyazaki et al., 2005 |
N/A |
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Experimental Models: Organisms/Strains |
Mouse: C57BL/6J |
Japan SLC, Inc. |
C57BL/6JJmsSlc |
Mouse: Tcf3fl/fl
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Jones and Zhuang, 2007 |
N/A |
Mouse: Tcf12fl/fl
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Jones and Zhuang, 2007 |
N/A |
Mouse: Id2/+TA/+
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This paper |
N/A |
Mouse: Tcf3E2A-gfp/E2A-gfp
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Zhuang et al., 2004 |
N/A |
Mouse: E47−/−
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Engel et al., 2001 |
N/A |
Mouse: Id2yfp/+
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Yang et al., 2011 |
N/A |
Mouse: Id2fl/fl
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Niola et al., 2012, |
N/A |
Mouse: Il7rCre
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Schlenner et al., 2010 |
N/A |
Mouse: Zbtb16GFPcre+/−
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The Jackson Laboratory |
JAX: 024529 |
Mouse: ERT2cre
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The Jackson Laboratory |
JAX: 008463 |
Mouse: ROSAYFP/YFP
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The Jackson Laboratory |
JAX: 006148 |
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Oligonucleotides |
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Recombinant DNA |
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Software and Algorithms |
FlowJo software |
Tree Star, Inc. |
N/A |
Bowtie |
Langmead et al., 2009 |
http://bowtie-bio.sourceforge.net/index.shtml |
TopHat |
Trapnell et al., 2009 |
https://ccb.jhu.edu/software/tophat/index.shtml |
HOMER |
Heinz et al., 2010 |
http://homer.salk.edu |
Metascape |
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http://metascape.org/ |
GraphPad Prism 6 |
GraphPad Software |
N/A |
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Other |
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