Table 2. Evolutionary timescales of FVs and FLERVs.
Node* |
Total per-lineage substitution (substitutions per site) |
Evolutionary timescale (million years)† |
Ref | ||
---|---|---|---|---|---|
Median | 95% HPD‡ | Median | 95% HPD | ||
I | 0.031 | 0.017–0.048 | 0.96 | 0.69–1.21 | (ref. 39) |
II | 0.080 | 0.057–0.107 | 8.29 | 6.52–10.05 | (ref. 40) |
III | 0.126 | 0.097–0.163 | 16.52 | 13.33–19.61 | |
IV | 0.160 | 0.123–0.199 | 31.60 | 25.36–37.85 | |
V | 0.292 | 0.238–0.349 | 43.43 | 38.39–48.08 | |
VI | 0.348 | 0.288–0.413 | 86.92 | 76.34–97.22 | |
VII | 0.381 | 0.315–0.454 | 98.59 | 95.94–100.78 | (ref. 35) |
VIII | 0.436 | 0.357–0.523 | 100.95 | 98.40–103.83 | |
IX | 0.559 | 0.464–0.660 | 103.92 | 99.73–109.09 | |
X | 0.764 | 0.641–0.889 | 262.76 | 195.00–342.08 | NA |
XI | 0.908 | 0.771–1.056 | 347.89 | 250.62–479.97 | |
XII | 1.071 | 0.869–1.274 | 454.65 | 303.69–683.66 |
*Referring to the node numbers in the viral tree in Fig. 3 (left). Total per-lineage substitution and evolutionary timescale estimates of nodes I–IX were used to estimate the power-law time-dependent rate phenomenon model (Fig. 4). The model was then extrapolated to infer the timescale of nodes X–XII from their total per-lineage substitution estimates.
†Evolutionary timescale of nodes I–IX were directly inferred from those of their hosts. The references refer to the host date references.
‡‘95% HPD’=95% highest probability density interval.