Table 4.
Abundance of potato ncRNAs targeted by Potato virus Y-derived vsiRNAs
| PVY-N library | PVY-NTN library | PVY-O library | |||
|---|---|---|---|---|---|
| Target ncRNA transcript family | Target abundance | Target ncRNA transcript family | Target abundance | Target ncRNA transcript family | Target abundance |
| MIR821 | 1292 | MIR821 | 563 | MIR821 | 1309 |
| 28S RRNA | 344 | 28S RRNA | 370 | U5 | 305 |
| 18S RRNA | 271 | 18S RRNA | 142 | 28S RRNA | 210 |
| SNOR71 | 195 | SNOR71 | 122 | 18S RRNA | 206 |
| TRNA-MET | 43 | TRNA-MET | 44 | SNOR71 | 144 |
| U2 | 39 | U2 | 40 | U2 | 26 |
| SNORD25 | 29 | SNORD25 | 29 | U1 | 24 |
| MIR-395 | 27 | U1 | 29 | U6 | 17 |
| U5 | 22 | SNOSNR60_Z15 | 19 | PLANT_U3 | 16 |
| ACEA_U3 | 19 | MIR-395 | 19 | TRNA-CYS | 15 |
| SNOSNR60_Z15 | 18 | SNOR109 | 15 | TRNA-TYR | 12 |
| PLANT_U3 | 18 | SNOZ112 | 15 | 5.8S_RRNA | 9 |
| SNOR137 | 18 | U5 | 14 | SNOR109 | 9 |
| SNOZ112 | 15 | MIR171_1 | 13 | MIR171_1 | 9 |
| U6 | 15 | MIR159 | 12 | MIR169_5 | 8 |
| SNOR44_J54 | 14 | PLANT_U3 | 11 | MIR159 | 8 |
| MIR159 | 12 | SNOU49 | 10 | SNOR44_J54 | 6 |
| U1 | 12 | U6 | 9 | SNOR128 | 6 |
| SNOZ267 | 11 | SNOU19 | 9 | MIR169_2 | 6 |
| SNOU19 | 10 | SNOZ267 | 8 | SNOR99 | 6 |
| U3 | 10 | SNORD18 | 8 | SNORD18 | 5 |
| SNOR69Y | 9 | SNOF1_F2 | 8 | SNOR126 | 5 |
| SNOR109 | 9 | TRNA-SER | 8 | SNOR135 | 4 |
| SNOR74 | 9 | PLANT_SRP | 7 | SNORD36 | 4 |
| METAZOA_SRP | 8 | SNOR128 | 7 | MIR-172 | 4 |
| PLANT_SRP | 8 | MIR169_5 | 7 | SNOR74 | 4 |
| SNOF1_F2 | 6 | ENOD40 | 7 | MIR-166 | 4 |
| SNOU49 | 6 | SNOR137 | 7 | SNORD14 | 4 |
| SNORD14 | 6 | MIR396 | 6 | MIR-598 | 3 |
| SNOR104 | 5 | MIR-166 | 6 | SNOZ267 | 3 |
| MIR396 | 5 | SNOR135 | 5 | SNOZ161_228 | 3 |
| SNOR97 | 4 | SNOR104 | 5 | SNOR11 | 3 |
| U6ATAC | 4 | SNOR44_J54 | 4 | MIR-395 | 3 |
| SNOU30 | 4 | METAZOA_SRP | 4 | MIR168 | 3 |
| MIR169_5 | 4 | SNOU30 | 4 | ACEA_U3 | 3 |
| SNOR103 | 4 | U6ATAC | 4 | SNOZ196 | 3 |
| MIR-166 | 4 | MIR169_2 | 4 | SNOZ155 | 3 |
| MIR-160 | 3 | SNOR126 | 4 | U3 | 2 |
| SNORD100 | 3 | SNOZ155 | 3 | MIR-160 | 2 |
| SNOR30 | 3 | TRNA-LEU | 2 | PK-G12RRNA | 2 |
| TRNA-TYR | 3 | PK-G12RRNA | 2 | SNOR66 | 2 |
| ISRR | 3 | SNOR66 | 2 | SNOJ33 | 2 |
| TRNA-LEU | 3 | SNOR116 | 2 | TRNA-PRO | 2 |
| ENOD40 | 2 | SNOR24 | 2 | TRNA-MET | 2 |
| SNOR135 | 2 | SNOZ196 | 2 | TRNA-LEU | 1 |
| SNOR100 | 2 | SNORD100 | 2 | MIR396 | 1 |
| SNOZ101 | 2 | SNOR30 | 2 | SNORD96 | 1 |
| 5.8S_RRNA | 2 | SNOR100 | 2 | SNOR116 | 1 |
| MIR394 | 2 | SNOR60 | 2 | SNOR24 | 1 |
| MIR169_2 | 2 | SNORD27 | 2 | SNOZ101 | 1 |
| SNOR21 | 2 | MIR394 | 2 | SNOR114 | 1 |
| MIR171_1 | 1 | SNOR143 | 1 | TRNA-SER | 1 |
| SNOR143 | 1 | SNOR83 | 1 | SNOR104 | 1 |
| SNOR27 | 1 | SNOR27 | 1 | SNOR32_R81 | 1 |
| SNOR60 | 1 | MIR-172 | 1 | SNOU30 | 1 |
| Total | 2567 | TRNA-TYR | 1 | Total | 2437 |
| SNOU36A | 1 | ||||
| SNORD14 | 1 | ||||
| Total | 1632 | ||||
The abundance of ncRNA targets was grouped by the family or class of the non-coding RNA target transcripts