Table 3.

Proportion of outlier loci found in founder event simulations under the neutral model. We report the proportion of loci found with significant allele frequency differences (Fisher's exact test p < .05 after multiple test correction) from simulations of the founder event with five different founding population sizes. We simulated data 1,000 times for each founding population size with samples sizes that matched both eastern–western comparisons and Hawaii–western comparisons. We report the mean of each set of replicates ± standard error, and the empirical proportion calculated from dataset 1

Founder N e	Eastern sample size	Hawaiian sample size
20	0.343 ± 0.006	0.209 ± 0.005
200	0.042 ± 0.003	0.028 ± 0.002
2,000	0.010 ± 0.002	0.010 ± 0.001
100,000	0.006 ± 0.001	0.010 ± 0.001
No Bottleneck	0.005 ± 0.001	0.010 ± 0.001
Empirical	0.017	0.010