Table 2.
SNP | N | Allele type | Number of each genotype | Ancestral Allele freq. | Hobs | Hexp | HWE (P value) | |||
---|---|---|---|---|---|---|---|---|---|---|
Ancestral | Derived | AA | AD | DD | ||||||
rs3113195 | 47 | A | G | 11 | 30 | 6 | 0.447 | 0.638 | 0.494 | 0.100 |
rs6536991 | 47 | C | T | 4 | 14 | 29 | 0.234 | 0.298 | 0.359 | 0.395 |
rs12502572 | 47 | A | G | 11 | 30 | 6 | 0.447 | 0.638 | 0.494 | 0.100 |
rs1800592 | 47 | T | C | 7 | 27 | 13 | 0.436 | 0.574 | 0.492 | 0.433 |
rs4956451 | 47 | A | G | 7 | 27 | 13 | 0.436 | 0.574 | 0.492 | 0.433 |
rs9995751 | 47 | C | T | 8 | 23 | 16 | 0.415 | 0.489 | 0.486 | 1.000 |
AA, DD, and AD represent a homozygote of an ancestral allele, a homozygote of a derived allele, and a heterozygote of ancestral/derived alleles, respectively. Hobs and Hexp indicate an observed and expected heterozygosity, respectively. HWE indicates the Hardy-Weinberg equilibrium, and those values are the probabilities that did not deviate from the HWE.