Table 6. Summary of Cluster Appearance in MD Simulations of Different GQs^a.

		cluster
PDB and (simulation no.)	loop no.	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23
1KF1 (1)	1	×		×					×								×
	2	×			×	×		×	×	×
	3	×		×							×						×
1KF1 (2)	1	×	×	×						×				×
	2	×	×		×	×	×			×	×					×
	3	×	×	×				×	×	×	×	×		×			×		×
1KF1 (3)	1	×	×	×						×	×							×	×
	2	×		×							×		×				×			×
	3	×		×	×	×	×				×		×			×			×	×	×
1K8P (4)	1	×		×	×			×
	2	×			×			×				×	×						×	×
2HY9 (6)	1	×	×	×					×	×				×			×
2HY9 (7)	1		×	×				×		×				×			×			×	×
2GKU (8)	1				×	×			×	×							×		×		×			×
2JPZ (9)	3											×			×				×
2JPZ (10)	3		×			×	×							×	×	×	×	×			×
2MBJ (11)	2																					×
2MBJ (12)	2														×							×	×	×

^aClusters that appeared in the simulations are indicated by a ‘×’ sign.