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. 2017 Jul 17;83(15):e00633-17. doi: 10.1128/AEM.00633-17

TABLE 3.

Isolates analyzed in the present study

Strain identifier GenBank accession no. Source state Sample type Collection date
PNUSAL000140a SRR974871 New Mexico Clinical July 2013
PNUSAL000355 SRR1027093 California Clinical October 2013
CFSAN009740 SRR1200763 New York Cheese December 2012
PNUSAL000569 SRR1174760 Maryland Clinical August 2013
PNUSAL000571 SRR1193826 Maryland Clinical August 2013
PNUSAL000570 SRR1193825 Maryland Clinical August 2013
PNUSAL000517 SRR1112195 Maryland Clinical October 2013
PNUSAL000520 SRR1112204 Maryland Clinical November 2013
CFSAN011016 SRR1378358 Maryland Cheese February 2014
CFSAN011017 SRR1378351 Maryland Cheese February 2014
CFSAN011018 SRR1378353 Maryland Cheese February 2014
CFSAN010068 NZ_CP014250.1b Maryland Cheese February 2014
CFSAN010069 SRR1181541 Maryland Cheese February 2014
CFSAN010070 SRR1181568 Maryland Cheese February 2014
CFSAN010071 SRR1181535 Maryland Cheese February 2014
CFSAN010072 SRR1181561 Maryland Cheese February 2014
CFSAN010073 SRR1181538 Maryland Cheese February 2014
CFSAN010074 SRR1181554 Maryland Cheese February 2014
CFSAN010075 SRR1181556 Maryland Cheese February 2014
CFSAN010076 SRR1181567 Maryland Cheese February 2014
CFSAN010077 SRR1181511 Maryland Cheese February 2014
CFSAN011015 SRR1378347 Maryland Cheese February 2014
CFSAN010972 SRR1198952 Washington, DC Cheese February 2014
CFSAN010973 SRR1198878 Washington, DC Cheese February 2014
CFSAN010088 SRR1195636 Delaware Environment February 2014
CFSAN010089 SRR1195637 Delaware Environment February 2014
CFSAN010090 SRR1195675 Delaware Environment February 2014
CFSAN010091 SRR1195661 Delaware Environment February 2014
CFSAN010092 SRR1195691 Delaware Environment February 2014
CFSAN010093 SRR1186333 Delaware Environment February 2014
CFSAN010094 SRR1195629 Delaware Environment February 2014
CFSAN010095 SRR1195657 Delaware Environment February 2014
CFSAN010096 SRR1195670 Delaware Environment February 2014
CFSAN010097 SRR1186346 Delaware Environment February 2014
CFSAN010098 SRR1186334 Delaware Environment February 2014
CFSAN018314 SRR1555351 Delaware Environment May 2014
CFSAN010067 SRR1177313 Virginia Cheese February 2014
CFSAN010078 SRR1181539 Virginia Cheese February 2014
CFSAN010079 SRR1182716 Virginia Cheese February 2014
CFSAN010080 SRR1182219 Virginia Cheese February 2014
CFSAN010081 SRR1182220 Virginia Cheese February 2014
CFSAN010082 SRR1182225 Virginia Cheese February 2014
CFSAN010083 SRR1182221 Virginia Cheese February 2014
CFSAN010084 SRR1182222 Virginia Cheese February 2014
CFSAN010085 SRR1182223 Virginia Cheese February 2014
CFSAN010086 SRR1182224 Virginia Cheese February 2014
CFSAN010087 SRR1181522 Virginia Cheese February 2014
CFSAN010754 SRR1187613 Virginia Cheese February 2014
CFSAN010755 SRR1187589 Virginia Cheese February 2014
CFSAN010756 SRR1187587 Virginia Cheese February 2014
CFSAN010757 SRR1187440 Virginia Cheese February 2014
CFSAN010758 SRR1187427 Virginia Cheese February 2014
CFSAN010759 SRR1187445 Virginia Cheese February 2014
CFSAN010760 SRR1187584 Virginia Cheese February 2014
CFSAN010761 SRR1187420 Virginia Cheese February 2014
CFSAN010762 SRR1187616 Virginia Cheese February 2014
CFSAN010763 SRR1187425 Virginia Cheese February 2014
a

All isolates were serotype 1/2b, CC5. All isolates except PNUSAL000140 had the PFGE pattern GX6A16.0259/GX6A12.2046 (AscI/ApaI).

b

For identification of SNPs via the CFSAN SNP Pipeline, the completely closed genome of the reference isolate and raw reads from other isolates were used. The closed genome was not used in the wgMLST/cgMLST analyses.