Table 6. Description and primer/probe sequence used for genotyping for 4 SNPs.
ID | Gene name | Chromosome | Functional Consequence | Nucleotide substitution | Primer sequences/Probe sequence |
---|---|---|---|---|---|
rs603965 G870A | CCND1 | 11:69648142 | Synonymous codon | G>A | Forward:5’-GTGAAGTTCATTTCCAATCCGC-3’ Reverse: 5’-GGG ACA TCACCCTCACTTAC-3’. |
rs1346787 | EFEMP1 | 2:55865477 | downstream variant 500B, intron variant | A>G | 5’-TCATTCCTCTTACCCTGTCTACATG[A/G] TTGCTTACAGTCAAGATAAATTACA-3’ |
rs3791679 | EFEMP1 | 2:55869757 | Intron variant | G>A | 5’-TAACTGTTTCATGCTAATGATGTTA[G/A] TCATCCAGTTACAATTTTCTCAAAA-3’ |
rs17047290 | EFEMP1 | 2:55878799 | Intron variant | A>G | 5’-TGGCAATTACTAGCTTGGTCTTAAC[C/T] TCTCGAGCTTGCATTTCCTCTTCTG-3’ |