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. 2017 Mar 27;8(23):37561–37567. doi: 10.18632/oncotarget.16581

Table 6. Description and primer/probe sequence used for genotyping for 4 SNPs.

ID Gene name Chromosome Functional Consequence Nucleotide substitution Primer sequences/Probe sequence
rs603965 G870A CCND1 11:69648142 Synonymous codon G>A Forward:5’-GTGAAGTTCATTTCCAATCCGC-3’ Reverse: 5’-GGG ACA TCACCCTCACTTAC-3’.
rs1346787 EFEMP1 2:55865477 downstream variant 500B, intron variant A>G 5’-TCATTCCTCTTACCCTGTCTACATG[A/G] TTGCTTACAGTCAAGATAAATTACA-3’
rs3791679 EFEMP1 2:55869757 Intron variant G>A 5’-TAACTGTTTCATGCTAATGATGTTA[G/A] TCATCCAGTTACAATTTTCTCAAAA-3’
rs17047290 EFEMP1 2:55878799 Intron variant A>G 5’-TGGCAATTACTAGCTTGGTCTTAAC[C/T] TCTCGAGCTTGCATTTCCTCTTCTG-3’