Table 6. Variants of ITS2 (cloned and deep sequenced) with number of haplotypes from cloning and deep sequencing and total number of nucleotide polymorphisms.
| Lineage & Isolate | Number of Cloned Sequences | Total Number of Cloned ITS2 Haplotypes | Total Number of Deep Sequenced ITS2 Haplotypes | Total Number of Deep Sequenced Nucleotide Polymorphisms |
|---|---|---|---|---|
| PLUVIALIS Lineage (Haematococcus pluvialis SAG 34-1b) | 9 | 5 | 6 | 9 |
| RUBICUNDUS Lineage (Haematococcus rubicundus SAG 34-1c) | N/A | N/A | 4 | 5 |
| Lineage C (Haematococcus pluvialis SAG 34-1f) | 11 | 3 | 3 | 10 |
| RUBENS Lineage (Haematococcus rubens SAG 34-1h) | 18 | 6 | 3 | 14 |
| RUBICUNDUS Lineage (Haematococcus rubicundus SAG 34-1m) | 10 | 4 | 4 | 6 |
| PLUVIALIS Lineage (Haematococcus pluvialis SAG 49.94) | 10 | 4 | 5 | 7 |
| Lineage D (Haematococcus pluvialis SAG 44.96) | 11 | 3 | 3 | 3 |
|
Lineage B (Haematococcus pluvialis HP036) |
8 | 3 | 6 | 6 |
|
PLUVIALIS Lineage (Haematococcus pluvialis HP111) |
N/A | N/A | 4 | 3 |