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. 2017 Jul 19;8:1243. doi: 10.3389/fpls.2017.01243

Table 1.

Transcriptome-based identification of genes involved in anthocyanin biosynthesis in radish.

Enzyme Full gene name EC number Number of Unigenes Gene Annotation Unigene ID
PAL Phenylalanine ammonia lyase EC:4.3.1.24 14 PAL1 CL2858.Contig3_NAU-YH,
Unigene13215_NAU-YH,
Unigene29856_NAU-YH,
Unigene29857_NAU-YH,
Unigene3029_NAU-YH
PAL2 CL2858.Contig2_NAU-YH,
CL2858.Contig4_NAU-YH,
CL2858.Contig5_NAU-YH,
Unigene29855_NAU-YH,
CL2858.Contig1_NAU-YH
PAL4 Unigene17724_NAU-YH,
Unigene17857_NAU-YH,
Unigene17723_NAU-YH
C4H Cinnamate 4-hydroxylase EC:1.14.13.11 8 C4H CL3932.Contig4_NAU-YH,
CL3932.Contig5_NAU-YH,
Unigene10552_NAU-YH,
Unigene11266_NAU-YH,
CL3932.Contig1_NAU-YH,
CL3932.Contig2_NAU-YH,
CL3932.Contig3_NAU-YH,
Unigene29684_NAU-YH
4CL 4-coumarate–CoA EC:6.2.1.12 17 4CL1 Unigene28587_NAU-YH,
Unigene28588_NAU-YH
4CL4 Unigene26090_NAU-YH,
Unigene11346_NAU-YH,
Unigene1876_NAU-YH
4CL3 Unigene24485_NAU-YH,
Unigene24486_NAU-YH,
Unigene24487_NAU-YH,
Unigene24488_NAU-YH,
CL6005.Contig1_NAU-YH,
CL6005.Contig2_NAU-YH
4CL10 CL10957.Contig1_NAU-YH,
CL2343.Contig1_NAU-YH
4CL-LIKE CL5789.Contig1_NAU-YH,
CL5789.Contig2_NAU-YH,
CL11872.Contig1_NAU-YH,
CL11872.Contig2_NAU-YH
CHS Chalcone synthase EC:2.3.1.74 10 CHS1 CL14029.Contig2_NAU-YH,
Unigene4661_NAU-YH,
Unigene9761_NAU-YH,
CL14029.Contig1_NAU-YH,
CL2470.Contig2_NAU-YH,
Unigene5006_NAU-YH
CHS3 CL2470.Contig1_NAU-YH,
Unigene37218_NAU-YH
CHS8 Unigene3641_NAU-YH
CHS5 Unigene5900_NAU-YH
CHI Chalcone—flavonone isomerase EC:5.5.1.6 6 CHI CL12905.Contig1_NAU-YH,
CL12905.Contig2_NAU-YH,
CL4842.Contig1_NAU-YH,
CL4842.Contig2_NAU-YH,
Unigene12692_NAU-YH,
Unigene14025_NAU-YH
F3H Flavanone 3-hydroxylase/Flavonol synthase EC:1.14.11.23 11 F3H Unigene17936_NAU-YH,
Unigene17937_NAU-YH,
CL6897.Contig2_NAU-YH,
CL7327.Contig5_NAU-YH,
Unigene10168_NAU-YH,
Unigene10580_NAU-YH,
Unigene11483_NAU-YH,
Unigene13117_NAU-YH,
Unigene22378_NAU-YH,
Unigene34749_NAU-YH,
Unigene3501_NAU-YH
F3'H Flavonoid 3‘ hydroxylase EC:1.14.13.21 11 F3'H1 Unigene8907_NAU-YH,
Unigene8883_NAU-YH,
Unigene8884_NAU-YH,
CL1992.Contig1_NAU-YH,
CL2046.Contig3_NAU-YH
F3'H2 CL2785.Contig1_NAU-YH,
Unigene1076_NAU-YH,
Unigene1361_NAU-YH,
Unigene210_NAU-YH,
Unigene2815_NAU-YH,
Unigene8885_NAU-YH
DFR Dihydroflavonol 4-reductase EC:1.1.1.219 1.1.1.234 6 DFR CL1858.Contig1_NAU-YH,
CL1858.Contig2_NAU-YH,
CL1858.Contig3_NAU-YH,
Unigene20944_NAU-YH,
Unigene34696_NAU-YH
DFR-LIKE Unigene5033_NAU-YH
ANS Anthocyanidin synthase/leucoanthocyanidin dioxygenase EC:1.14.11.19 11 ANS CL12532.Contig1_NAU-YH,
CL12532.Contig2_NAU-YH,
CL6245.Contig1_NAU-YH,
CL6593.Contig1_NAU-YH,
CL6593.Contig2_NAU-YH,
CL8001.Contig1_NAU-YH,
Unigene13296_NAU-YH,
CL13551.Contig1_NAU-YH,
CL6549.Contig1_NAU-YH,
Unigene4289_NAU-YH,
Unigene4558_NAU-YH
ANR Anthocyanidin reductace EC:1.3.1.77 1 ANR Unigene4158_NAU-YH
UFGT UDP-glucosyl transferase EC:2.4.1.- 147 UFGT CL1797.Contig1_NAU-YH,
CL1797.Contig2_NAU-YH,
Unigene3464_NAU-YH,
Unigene12158_NAU-YH,
Unigene17156_NAU-YH,
Unigene11916_NAU-YH,
CL8206.Contig1_NAU-YH,
CL7501.Contig1_NAU-YH,
CL5504.Contig1_NAU-YH
GST Glutathione S-transferase EC:2.5.1.18 61 GST CL1126.Contig1_NAU-YH,
CL1126.Contig2_NAU-YH,
CL11539.Contig1_NAU-YH,
CL11539.Contig2_NAU-YH,
CL12204.Contig1_NAU-YH,
CL12204.Contig2_NAU-YH,
CL1696.Contig1_NAU-YH,
CL1696.Contig2_NAU-YH,
CL1696.Contig3_NAU-YH,
CL1696.Contig4_NAU-YH,
CL1696.Contig5_NAU-YH
OMT Flavone 3′-O-methyl transferase EC:2.1.1.76 24 OMT CL13021.Contig1_NAU-YH,CL13021.Contig2_NAU-YH,
CL2449.Contig1_NAU-YH,
CL2449.Contig2_NAU-YH,
CL2449.Contig3_NAU-YH,
CL2449.Contig4_NAU-YH,
CL88.Contig1_NAU-YH,
CL88.Contig2_NAU-YH,
CL9532.Contig1_NAU-YH,
CL9532.Contig2_NAU-YH,
CL9933.Contig1_NAU-YH,
CL9933.Contig2_NAU-YH,
Unigene13005_NAU-YH,
Unigene13175_NAU-YH