Table 3.
Markers significantly associated with soluble solid content, fruit weight, fruit shape index, and fruit color parameters (L*, Hue, and Chroma) identified by association analysis.
| Trait | Marker name | Chromosome | Physical position (SL2.40) | p-value | Phenotypic variation explained (%) |
|---|---|---|---|---|---|
| Soluble solid content | sli2868 | 1 | 70500607 | 1.27E-11 | 14.5 |
| sli2875 | 1 | 72511190 | 8.11E-07 | 20.6 | |
| sli2916 | 1 | 81603104 | 6.53E-06 | 25.5 | |
| sli311 | 2 | 13572187 | 7.59E-05 | 13.9 | |
| sli2686 | 2 | 25824814 | 4.55E-07 | 8.9 | |
| sli2221 | 4 | 9883293 | 8.35E-08 | 5.6 | |
| sli3316 | 4 | 54162751 | 3.29E-11 | 13.8 | |
| sli493 | 5 | 3635186 | 2.36E-05 | 2.6 | |
| sli408 | 5 | 14801010 | 4.11E-06 | 4.5 | |
| sli500 | 5 | 37859546 | 9.52E-05 | 3.7 | |
| sli508 | 5 | 39790245 | 3.00E-06 | 3.6 | |
| sli562 | 5 | 54572647 | 3.65E-06 | 5.4 | |
| sli571 | 5 | 57656536 | 4.35E-07 | 10.7 | |
| sli589 | 5 | 61241179 | 7.27E-05 | 12.2 | |
| sli634 | 6 | 7801283 | 1.60E-07 | 6.2 | |
| sli660 | 6 | 13668472 | 1.47E-06 | 9.8 | |
| sli665 | 6 | 14558967 | 4.14E-06 | 6.3 | |
| sli761 | 6 | 37324771 | 1.37E-14 | 22.3 | |
| sli919 | 7 | 38991134 | 1.71E-07 | 15.3 | |
| sli1147 | 8 | 31663632 | 8.68E-06 | 24.9 | |
| sli4003 | 9 | 13623231 | 4.85E-05 | 16.5 | |
| sli1324 | 9 | 14404856 | 2.21E-05 | 4.6 | |
| sli1490 | 9 | 15826796 | 1.95E-08 | 10.4 | |
| sli1368 | 9 | 31114697 | 1.12E-06 | 18.4 | |
| Fruit weight | sli201 | 1 | 29372090 | 1.63E-05 | 5.2 |
| sli2887 | 1 | 75604440 | 2.95E-08 | 20.5 | |
| sli2438 | 3 | 2044312 | 1.45E-05 | 17.9 | |
| sli2221 | 4 | 9883293 | 3.26E-12 | 4.5 | |
| sli3003 | 4 | 16716471 | 2.56E-05 | 2.1 | |
| sli2307 | 4 | 33951126 | 3.36E-05 | 2.8 | |
| sli2329 | 4 | 41110769 | 3.36E-05 | 2.8 | |
| sli2388 | 4 | 55504498 | 4.73E-05 | 6.5 | |
| sli580 | 5 | 59621517 | 8.94E-05 | 2.9 | |
| sli1146 | 8 | 31471959 | 7.76E-14 | 22.9 | |
| sli1147 | 8 | 31663632 | 3.15E-07 | 12.6 | |
| sli1497 | 9 | 20876005 | 2.61E-15 | 3.4 | |
| sli1498 | 9 | 22109103 | 7.22E-06 | 10.5 | |
| sli1516 | 9 | 39903394 | 1.25E-08 | 5.8 | |
| sli1464 | 9 | 65041065 | 1.28E-09 | 18.9 | |
| sli1873 | 11 | 33962309 | 5.13E-06 | 9.2 | |
| sli1886 | 11 | 37929907 | 6.86E-21 | 7.9 | |
| Fruit shape index | sli2653 | 3 | 60117959 | 2.17E-05 | 3.5 |
| sli2655 | 3 | 60656932 | 2.31E-06 | 2.0 | |
| sli2216 | 4 | 7766862 | 2.61E-05 | 7.4 | |
| sli2347 | 4 | 46429902 | 4.04E-08 | 2.0 | |
| sli2378 | 4 | 53631402 | 2.68E-07 | 2.5 | |
| sli2384 | 4 | 54772171 | 1.23E-08 | 5.2 | |
| sli2419 | 4 | 62034593 | 1.03E-04 | 2.9 | |
| sli45 | 5 | 8155946 | 1.07E-05 | 5.4 | |
| sli451 | 5 | 23416656 | 1.92E-08 | 5.1 | |
| sli470 | 5 | 29201547 | 8.39E-05 | 5.6 | |
| sli565 | 5 | 55625013 | 2.63E-05 | 5.0 | |
| sli571 | 5 | 57656536 | 9.59E-05 | 8.1 | |
| sli665 | 6 | 14558967 | 4.63E-05 | 3.3 | |
| sli855 | 7 | 21689257 | 4.96E-05 | 4.2 | |
| sli1414 | 9 | 53917837 | 2.81E-13 | 2.4 | |
| L* | sli2799 | 1 | 43606482 | 2.71E-09 | 5.9 |
| sli2940 | 1 | 87328257 | 4.05E-11 | 23.4 | |
| sli2556 | 3 | 33299542 | 8.81E-05 | 5.1 | |
| sli2215 | 4 | 7234645 | 4.12E-05 | 5.1 | |
| sli2272 | 4 | 25200675 | 9.71E-06 | 2.0 | |
| sli2299 | 4 | 32139951 | 1.03E-06 | 2.6 | |
| sli2302 | 4 | 32770761 | 1.03E-06 | 2.6 | |
| sli2323 | 4 | 39113326 | 8.79E-07 | 3.6 | |
| sli2333 | 4 | 42413320 | 1.03E-06 | 2.6 | |
| sli477 | 5 | 30794762 | 2.76E-14 | 3.0 | |
| sli495 | 5 | 36780476 | 2.40E-09 | 2.9 | |
| sli508 | 5 | 39790245 | 2.18E-06 | 3.1 | |
| sli571 | 5 | 57656536 | 4.10E-07 | 6.1 | |
| sli685 | 6 | 20250580 | 4.80E-14 | 14.7 | |
| sli1346 | 9 | 23125992 | 1.42E-08 | 3.7 | |
| sli1970 | 12 | 10754442 | 2.34E-06 | 9.2 | |
| Hue | sli2792 | 2 | 48225893 | 7.92E-14 | 3.2 |
| sli2309 | 4 | 34621455 | 7.81E-05 | 2.2 | |
| sli685 | 6 | 20250580 | 7.90E-13 | 4.2 | |
| Chroma | sli2799 | 1 | 43606482 | 8.80E-07 | 9.2 |
| sli2940 | 1 | 87328257 | 5.00E-09 | 10.3 | |
| sli296 | 2 | 9872987 | 2.89E-10 | 11.0 | |
| sli325 | 2 | 16913369 | 2.89E-10 | 11.0 | |
| sli2792 | 2 | 48225893 | 1.40E-14 | 5.9 | |
| sli3313 | 4 | 53694137 | 1.19E-05 | 14.3 | |
| sli3316 | 4 | 54162751 | 1.52E-11 | 14.6 | |
| sli45 | 5 | 8155946 | 1.17E-25 | 4.8 | |
| sli418 | 5 | 16965721 | 4.47E-08 | 3.5 | |
| sli477 | 5 | 30794762 | 8.51E-05 | 8.0 | |
| sli508 | 5 | 39790245 | 1.77E-05 | 8.2 | |
| sli522 | 5 | 43463720 | 1.33E-08 | 7.9 | |
| sli556 | 5 | 52455728 | 7.35E-06 | 8.5 | |
| sli568 | 5 | 56274851 | 1.33E-05 | 5.9 | |
| sli571 | 5 | 57656536 | 6.72E-19 | 17.0 | |
| sli588 | 5 | 61020978 | 5.16E-14 | 26.3 | |
| sli652 | 6 | 12252957 | 1.08E-06 | 14.3 | |
| sli685 | 6 | 20250580 | 1.80E-08 | 16.6 | |
| sli28 | 6 | 39518119 | 1.08E-06 | 7.5 | |
| sli1322 | 9 | 14058288 | 2.82E-06 | 9.8 | |
| sli1324 | 9 | 14404856 | 1.64E-06 | 6.7 | |
| sli1346 | 9 | 23125992 | 9.95E-21 | 8.7 | |
| sli1520 | 9 | 41701481 | 1.51E-09 | 11.6 | |
| sli1423 | 9 | 56541008 | 9.77E-13 | 6.7 | |
| sli1864 | 11 | 30139161 | 3.77E-05 | 7.6 | |
| sli1970 | 12 | 10754442 | 2.02E-05 | 11.5 | |
| sli2056 | 12 | 38855927 | 7.97E-09 | 9.7 |