Table 2.
CpG ID | Chr | Pos (bp) | DMR | Gene | Region | F stat | P value | Control | Case | ∆beta |
---|---|---|---|---|---|---|---|---|---|---|
cg17178900 | 1 | 205,818,956 | 1 | PM20D1 | Body | 6.54 | 0.014 | 0.470 | 0.646 | 0.176 |
cg26354017 | 1 | 205,819,088 | 1 | PM20D1 | 1stExon | 6.50 | 0.014 | 0.411 | 0.599 | 0.188 |
cg14159672 | 1 | 205,819,179 | 1 | PM20D1 | 1stExon | 6.09 | 0.017 | 0.444 | 0.616 | 0.173 |
cg14893161 | 1 | 205,819,251 | 1 | PM20D1 | 5′UTR | 7.42 | 0.009 | 0.328 | 0.498 | 0.169 |
cg11965913 | 1 | 205,819,406 | 1 | PM20D1 | TSS200 | 5.38 | 0.025 | 0.303 | 0.467 | 0.164 |
cg24503407 | 1 | 205,819,492 | 1 | PM20D1 | TSS1500 | 6.38 | 0.015 | 0.404 | 0.560 | 0.157 |
cg25644740 | 6 | 29,894,152 | 2 | HCG4P6 | TSS1500 | 5.93 | 0.019 | 0.448 | 0.612 | 0.164 |
cg04520169 | 6 | 29,894,195 | 2 | HCG4P6 | TSS1500 | 7.27 | 0.010 | 0.377 | 0.524 | 0.148 |
cg23237314 | 6 | 29,894,197 | 2 | HCG4P6 | TSS1500 | 6.97 | 0.011 | 0.374 | 0.492 | 0.117 |
cg08491487 | 6 | 30,039,130 | 3 | RNF39 | Body | 10.02 | 0.003 | 0.078 | 0.181 | 0.103 |
cg00947782 | 6 | 30,039,142 | 3 | RNF39 | Body | 12.34 | 0.001 | 0.102 | 0.210 | 0.108 |
cg03343571 | 6 | 30,039,175 | 3 | RNF39 | Body | 13.64 | 0.001 | 0.212 | 0.334 | 0.122 |
cg13185413 | 6 | 30,039,202 | 3 | RNF39 | Body | 11.78 | 0.001 | 0.206 | 0.326 | 0.119 |
cg09279736 | 6 | 30,039,403 | 3 | RNF39 | Body | 14.19 | 0.000 | 0.287 | 0.404 | 0.117 |
cg07382347 | 6 | 30,039,408 | 3 | RNF39 | Body | 13.22 | 0.001 | 0.153 | 0.295 | 0.142 |
cg13401893 | 6 | 30,039,432 | 3 | RNF39 | Body | 19.38 | 0.000 | 0.350 | 0.508 | 0.158 |
cg12633154 | 6 | 30,039,435 | 3 | RNF39 | Body | 18.69 | 0.000 | 0.310 | 0.477 | 0.167 |
cg10568066 | 6 | 30,039,442 | 3 | RNF39 | Body | 22.29 | 0.000 | 0.372 | 0.560 | 0.188 |
cg16078649 | 6 | 30,039,466 | 3 | RNF39 | Body | 13.37 | 0.001 | 0.346 | 0.451 | 0.105 |
cg10930308 | 6 | 30,039,476 | 3 | RNF39 | Body | 12.69 | 0.001 | 0.193 | 0.317 | 0.125 |
cg01341801 | 6 | 32,489,203 | 4 | DRB5 | Body | 4.419 | 0.041 | 0.249 | 0.455 | 0.205 |
cg26981746 | 6 | 32,490,012 | 4 | DRB5 | Body | 4.645 | 0.036 | 0.501 | 0.633 | 0.132 |
cg12015991 | 6 | 32,490,043 | 4 | DRB5 | Body | 5.591 | 0.022 | 0.649 | 0.778 | 0.128 |
cg08578320 | 6 | 32,552,039 | 5 | DRB1 | Body | 6.558 | 0.014 | 0.754 | 0.588 | −0.166 |
cg09139047 | 6 | 32,552,042 | 5 | DRB1 | Body | 5.129 | 0.028 | 0.754 | 0.576 | −0.179 |
cg15602423 | 6 | 32,552,095 | 5 | DRB1 | Body | 8.966 | 0.004 | 0.659 | 0.387 | −0.272 |
cg15982117 | 6 | 32,552,106 | 5 | DRB1 | Body | 5.811 | 0.020 | 0.684 | 0.492 | −0.192 |
cg14645244 | 6 | 32,552,205 | 5 | DRB1 | Body | 6.068 | 0.017 | 0.521 | 0.318 | −0.203 |
cg09949906 | 6 | 32,552,350 | 5 | DRB1 | Body | 5.076 | 0.029 | 0.699 | 0.507 | −0.192 |
cg10632894 | 6 | 32,552,453 | 5 | DRB1 | Body | 4.536 | 0.038 | 0.825 | 0.681 | −0.144 |
cg01053087 | 8 | 637,909 | 6 | ERICH1 | Body | 10.55 | 0.002 | 0.330 | 0.164 | −0.166 |
cg05875700 | 8 | 638,208 | 6 | ERICH1 | Body | 8.864 | 0.005 | 0.319 | 0.120 | −0.199 |
cg12641240 | 8 | 638,330 | 6 | ERICH1 | Body | 6.055 | 0.018 | 0.194 | 0.069 | −0.125 |
DMP differentially methylated position, DMR differentially methylated region