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. 2016 Feb 18;2:16001. doi: 10.1038/npjsba.2016.1

Table 2. Data sets for the four main case studies.

Study data set Summary Microarray platform # Of samples Stages of differentiation/development # Of probes
Kolle et al.52 GSE13201 HES2 embryonic stem cells were sorted by the presence of GCTM-2 and CD9 into four populations using Fluorescence Activated Cell Sorting (FACS) method Illumina Human-6 v2.0 Expression BeadChip (Illumina Inc., San Diego, CA, USA) 12 P7 (×3) 48,687
          P6 (×3)  
          P5 (×3)  
          P4 (×3)  
Hartl et al.43 GSE8091 Transcriptome of embryonic mouse brain development at 9.5, 11.5 and 13.5 embryonic days Affymetrix Mouse Genome 430 2.0 Array (Affymetrix Inc., Santa Clara, CA, USA) 16 E9 (×6) 45,102
          E11 (×4)  
          E13 (×6)  
Kouno et al.53 THP1-Mac Temporal gene-expression changes of THP1 single cells differentiating to macrophages BioMark Dynamic Arrays of Fluidigm for single-cell (Fluidigm Corporation, San Francisco, CA, USA) 240 0 h (×60) 45
          1 h (×60)  
          6 h (×60)  
          96 h (×60)  
Sartor et al.54 GSE17708 Temporal gene-expression changes during TGF-β-induced epithelial-mesenchymal transition Affymetrix Human Genome U133 Plus 2.0 Array (Affymetrix Inc.) 15 0 h (×3) 54,675
          8 h (×3)  
          16 h (×3)  
          24 h (×3)  
          72 h (×3)