Table 1. Assembly summary statistics and validation of Utricularia reniformis mtDNA master circle (MC) genome.
Number of mtDNA-related paired-end reads (2x300bp ~600bp) | 1,787,363 |
Number of mtDNA-related mate-paired reads (2x100bp ~3kbp) | 178,224 |
Total assembled size (excluding repeats > 500bp)(bp) | 831,638bp |
PE assembly statistics | |
- Nodes | 13 |
- Edges | 8 |
- Dead ends | 14 (53.85%) |
- Connected components | 5 |
- Contigs | 7 |
- Longest contig size | 335,336bp |
- Shortest contig size | 40,798bp |
- Average contig size | 118,634bp |
- N50 | 230,405 |
- L50 | 2 |
Master circle size (bp) | 857,234 |
Master circle size GC% | 43,98 |
- Average coverage | |
- Paired-end | 956x (st.dev. 265) |
- Mate-pairs | 40.98x (st.dev. 20.9) |
- Long Repeat (LR) coverage (25kb) | 1,342 (st.dev. 200) |
- Small Repeat (SR) coverage (3.2kb) | 1,201 (st. dev. 240) |
- Mapped reads in pairs | |
-paired-end reads | 1,762,585 (98.61%) |
-mate-paired reads | 177,316 (99.49%) |
- uncalled MC bases (Ns) | 9 (0.0010%) |
RNAseq mapping | |
- Total Number of Reads (single-end ~200bp) | 1,213,898 |
- Mitochondrial genome covered (bp) | 672,561 (78.45%) |
- Average coverage | 83.9x (st. dev. 566.4) |