Table 3.
Other properties of amalgaviruses, ZbV-Z, and unirnaviruses compared with Totiviridae family members
Virus length (aa): | Genus | GenBank no. | Genome length (bp) | Protein ORF1a | ORF1/ORF2b |
---|---|---|---|---|---|
Blueberry latent virus | Amalgavirus | HM029246 | 3431 | 375 | 1054 |
Rhododendron virus A | Amalgavirus | HQ128706 | 3427 | 404 | 1077 |
Southern tomato virus | Amalgavirus | EF442780 | 3437 | 377 | 1062 |
Vicia cryptic virus M | Amalgavirus | EU371896 | 3434 | 394 | 1057 |
Zygosaccharomyces bailii virus Z | “Zybavirus”c | KU200450 | 3160 | 290 | 1012 |
Alternaria longipes dsRNA virus 1 | “Unirnavirus”d | KJ817371 | 3415 | 394 | 997 |
Beauveria bassiana RNA virus 1/1 | “Unirnavirus” | LN610699 | 3218 | 315 | 926 |
Beauveria bassiana RNA virus 1/2 | “Unirnavirus” | KM233415 | 3173 | 315 | 926 |
Penicillium janczewskii Beauveria bassiana-like virus 1 | “Unirnavirus” | KT601106 | 2890e | 317 | 926 |
Ustilaginoidea virens RNA virus M | “Unirnavirus” | KJ101567 | (2714)e | (137)e | (745)e |
Ustilaginoidea virens unassigned | “Unirnavirus” | KR106133 | 2903 | 314 | 932 |
RNA virus HNND-1 | |||||
Saccharomyces cerevisiae virus L-A | Totivirus | J04692 | 4579 | 680 | 1505 |
Trichomonas vaginalis virus 1 | Trichomonasvirus | HQ607513 | 4684 | 678 | 1429 |
Helminthosporium victoriae virus 190S | Victorivirus | U41345 | 5179 | 772 | 1607b |
Leishmania RNA virus 1 | Leishmaniavirus | M92355 | 5284 | 741 | 1595 |
Giardia lamblia virus | Giardiavirus | L13218 | 6277 | 886 | 1870 |
Encoded protein starting with the first Met codon in ORF1. Ustilaginoidea virens RNA virus M (UvRV-M) is an exception as described below.
Encoded protein starting with the first Met codon in ORF1 and incorporating the +1 or −1 PRF predicted for each virus. UvRV-M is an exception as described below. For Helminthosporium victoriae virus 190S, in which the RdRp is translated as a separate product via a stop/restart mechanism (Li et al., 2015), the shown CP/RdRp length is the sum of the CP and RdRp lengths.
Newly proposed genus name (this study)
Name of proposed genus suggested by Kotta-Loizou et al. (2015)
The reported genome sequence of these viruses appears to be truncated at the 5′ end of plus strand, and their listed lengths may thus be artifactually low. In addition, ORF1 extends to the 5′ end, and the listed lengths reflect that.