Table 2.
N | t | Rate of pedigree coancestry (%) | Rate of genomic coancestry (%) | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
μ = 2.5 × 10−3 | μ = 2.5 × 10−5 | μ = 2.5 × 10−3 | μ = 2.5 × 10−5 | ||||||||||
RAN | PED | OVE | RAN | PED | OVE | RAN | PED | OVE | RAN | PED | OVE | ||
20 | 1 | 2.46 | 1.28 | 2.47 | 2.45 | 1.28 | 2.69 | 2.47 | 1.32 | 0.17 | 2.57 | 1.31 | 0.20 |
2 | 2.40 | 1.30 | 1.79 | 2.39 | 1.30 | 1.97 | 2.47 | 1.25 | 1.32 | 2.45 | 1.31 | 1.01 | |
3 | 2.44 | 1.30 | 1.73 | 2.43 | 1.30 | 1.89 | 2.34 | 1.24 | 1.29 | 2.30 | 1.32 | 1.08 | |
4 | 2.52 | 1.30 | 1.70 | 2.52 | 1.30 | 1.89 | 2.55 | 1.30 | 1.40 | 2.48 | 1.32 | 1.05 | |
5 | 2.46 | 1.30 | 1.75 | 2.45 | 1.30 | 1.88 | 2.40 | 1.35 | 1.50 | 2.48 | 1.30 | 1.10 | |
10 | 2.39 | 1.30 | 1.81 | 2.39 | 1.30 | 1.85 | 2.36 | 1.28 | 1.47 | 2.42 | 1.35 | 1.07 | |
100 | 1 | 0.50 | 0.25 | 0.74 | 0.52 | 0.25 | 1.05 | 0.50 | 0.26 | −0.16 | 0.55 | 0.22 | −0.40 |
2 | 0.51 | 0.25 | 0.50 | 0.48 | 0.25 | 0.69 | 0.50 | 0.25 | 0.23 | 0.57 | 0.25 | −0.16 | |
3 | 0.49 | 0.25 | 0.49 | 0.46 | 0.25 | 0.65 | 0.50 | 0.25 | 0.28 | 0.44 | 0.19 | −0.15 | |
4 | 0.50 | 0.25 | 0.48 | 0.52 | 0.25 | 0.63 | 0.51 | 0.26 | 0.31 | 0.60 | 0.27 | −0.05 | |
5 | 0.50 | 0.25 | 0.47 | 0.51 | 0.25 | 0.64 | 0.50 | 0.26 | 0.34 | 0.60 | 0.25 | −0.07 | |
10 | 0.50 | 0.25 | 0.46 | 0.50 | 0.25 | 0.58 | 0.51 | 0.26 | 0.37 | 0.47 | 0.19 | −0.03 |
Average linkage disequilibrium between consecutive SNPs at t = 0 was 0.28 and 0.13 for N = 20 and 100, respectively when μ = 2.5 × 10−3, and 0.40 and 0.21 for N = 20 and 100, respectively when μ = 2.5 × 10−5
RAN contributions are assigned at random, PED contributions are optimised to minimise f p, OVE contributions are optimised to minimise f m_ove