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. 2017 Jun 22;56(28):3632–3646. doi: 10.1021/acs.biochem.7b00446

Table 2. Nicotinamide Ring Puckering in Complexes of Horse Liver ADHa.

ligands PDB entries α-C4 (deg) α-N1 (deg) twist (Å)
NADH, H2Ob 4XD2 16.0 ± 1.6 12.6 ± 2.2 –0.26 ± 0.03
NADH, MHFc 1P1R, 5VN1 18.1 ± 4.2 11.2 ± 2.3 –0.04 ± 0.12
NADH, BNFd 5VL0 12.5 ± 3.9 13.1 ± 3.2 0.07 ± 0.07
NADH, variouse 1HET, 2JHG 12.3 ± 2.5 11.0 ± 4.5 –0.31 ± 0.19
NAD+, FALCf 4DXH, 4DWV 4.9 ± 2.3 5.8 ± 2.1 0.06 ± 0.03
a

The structures were refined with relaxed or no restraints on the nicotinamide ring. Ring puckering geometry is defined as follows: α-C4, angle between the C3–C4–C5 and C2–C3–C6 planes; α-N1, angle between the C2–N1–C6 and C2–C3–C6 planes; twist, distortion of the boat conformation, defined as the distance between C5 and the C2–C3–C6 plane.22

b

Weighted average from two subunits as calculated with SHELXL-2013 with no restraints on the nicotinamide ring.

c

Average of eight subunits of the enzyme complexed with NADH and N-1-methylhexylformamide, an aldehyde analogue and potent inhibitor,11 calculated with SHELXL-2013 after refinement with REFMAC.

d

Average of four subunits of the enzyme complexed with NADH and N-benzylformamide calculated with SHELXL-2013 after refinement with REFMAC.

e

Average of eight subunits from four structures of wild-type ADH with Zn(II) or Cd(II) at the active sites, complexed with NADH and other ligands, including water, methylpentanediol, dimethyl sulfoxide, or isobutyramide (PDB entries 1HEU, 2JHF, 1HET, and 2JHG).22,23

f

Weighted average of four subunits of the enzyme complexed with NAD+ and 2,3,4,5,6-pentafluorobenzyl alcohol or 2,2,2-trifluoroethanol calculated with SHELXL-2013 with no restraints on the nicotinamide ring.62