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. 2017 Jul 20;12(7):e0181489. doi: 10.1371/journal.pone.0181489

Fig 4. Opening of the matrix side observed in LRPF2 simulation.

Fig 4

(a-d) Time courses of helix angles (a), distance between Glu29 and Arg279 (b), contact between Phe88 and Tyr290 (c), and contact between Glu29 and the amino group at the adenine ring of ADP (d). See Supporting Material for the definition of the helix angle and the contact. Shaded areas indicate that a time region where a hydrogen-bond between Glu29 and the amino group of the adenine ring was established. (e) Snapshots of LRPF2 simulation at 1900 (left) ns and 2100 ns (right) before and after formation of the hydrogen-bond between Glu29 and the adenine ring, respectively. Close up views of the ADP binding site are shown in right panels.