Table 3.
Characteristics of amplified IRAP, REMAP and IRAP + REMAP loci in studied wild almond species populations.
| Population | CAR | COM | ELA | FEN | KOR | KOT | ORI | TRI | EBU | ERI | LYC | REU | URU | ARA | GLA | HAU | PAB | SCO |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| IRAP | ||||||||||||||||||
| Number of loci | 61 | 58 | 55 | 64 | 48 | 53 | 56 | 64 | 50 | 47 | 49 | 68 | 66 | 42 | 41 | 53 | 56 | 60 |
| Percentage of polymorphic loci (%) | 87.4 | 78.79 | 88.42 | 47.65 | 89.40 | 89.6 | 74.3 | 80.6 | 83.6 | 77.5 | 87.5 | 68.8 | 88.9 | 89.4 | 87.4 | 82.3 | 74.6 | 71.8 |
| Number of loci with frequency ≥5% | 61 | 58 | 55 | 64 | 48 | 53 | 56 | 64 | 50 | 47 | 49 | 68 | 66 | 42 | 41 | 53 | 56 | 60 |
| Number of private loci | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Number of less common loci (≤25%) | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 0 |
| Number of less common loci (≤50%) | 5 | 3 | 3 | 5 | 0 | 0 | 2 | 3 | 5 | 4 | 0 | 0 | 0 | 0 | 0 | 5 | 3 | 3 |
| Mean of heterozygosity | 0.26 | 0.23 | 0.23 | 0.26 | 0.25 | 0.25 | 0.208 | 0.22 | 0.22 | 0.22 | 0.24 | 0.24 | 0.24 | 0.25 | 0.23 | 0.25 | 0.22 | 0.208 |
| Standard error of mean heterozygosity | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.20 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 |
| REMAP | ||||||||||||||||||
| Number of loci | 50 | 54 | 50 | 55 | 56 | 54 | 60 | 62 | 48 | 49 | 65 | 42 | 50 | 53 | 41 | 56 | 49 | 60 |
| Percentage of polymorphic loci (%) | 81.2 | 85.2 | 80.64 | 85.32 | 88.64 | 63.24 | 72.35 | 83.25 | 75.65 | 68.25 | 84.32 | 65.89 | 88.25 | 74.65 | 87.35 | 85.69 | 75.65 | 74.32 |
| Number of loci with frequency ≥5% | 50 | 54 | 50 | 55 | 56 | 54 | 60 | 62 | 48 | 49 | 65 | 42 | 50 | 53 | 41 | 56 | 49 | 60 |
| Number of private loci | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 |
| Number of less common loci (≤25%) | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Number of less common loci (≤50%) | 0 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Mean of heterozygosity | 0.26 | 0.25 | 0.27 | 0.28 | 0.26 | 0.25 | 0.25 | 0.325 | 0.26 | 0.24 | 0.25 | 0.27 | 0.24 | 0.25 | 0.23 | 0.22 | 0.23 | 0.20 |
| Standard error of mean heterozygosity | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.023 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 |
| IRAP + REMAP | ||||||||||||||||||
| Number of loci | 111 | 112 | 105 | 119 | 100 | 107 | 116 | 126 | 98 | 96 | 114 | 110 | 116 | 95 | 82 | 109 | 105 | 120 |
| Percentage of polymorphic loci (%) | 82.6 | 83.2 | 86.2 | 82.5 | 79.6 | 81.2 | 80.3 | 78.5 | 84.2 | 82.7 | 80.2 | 79.6 | 82.4 | 79.2 | 83.2 | 86.3 | 79.7 | 82.1 |
| Number of loci with frequency ≥5% | 111 | 112 | 105 | 119 | 100 | 107 | 116 | 126 | 98 | 96 | 114 | 110 | 116 | 95 | 82 | 109 | 105 | 120 |
| Number of private loci | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 |
| Number of less common loci (≤25%) | 0 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 1 | 0 | 0 |
| Number of less common loci (≤50%) | 5 | 6 | 4 | 6 | 1 | 1 | 3 | 4 | 6 | 5 | 1 | 1 | 1 | 1 | 0 | 5 | 3 | 3 |
| Mean of heterozygosity | 0.26 | 0.24 | 0.25 | 0.27 | 0.26 | 0.25 | 0.23 | 0.27 | 0.24 | 0.22 | 0.25 | 0.25 | 0.24 | 0.25 | 0.23 | 0.23 | 0.23 | 0.21 |
| Standard error of mean heterozygosity | 0.01 | 0.01 | 0.02 | 0.02 | 0.02 | 0.01 | 0.01 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.02 |