Table 2.
Summary of Illumina paired-end read sequence data, de novo assembly and detection of microsatellite repeats in the Passiflora edulis genome
Sequence information | Total # | Size variation (bp) | Average length (bp) | Total (bp) |
Illumina paired-end reads | 225,293,527 | 52–76 | 62.65 | 14,113,860,125 |
Contigs | 234,239 | 166–45,662 | 707 | 165,702,691 |
Microsatellite sequences | Total # | >5 repeats | ||
Compound and/or imperfect microsatellites | 1,544,549 | - | ||
Perfect di-nucleotides | 360,162 | 13,391 | ||
Perfect tri-nucleotides | 60,669 | 1436 | ||
Perfect tetra-nucleotides | 7463 | 186 | ||
Total | 1,972,843 | - |