TABLE 1.
Genes differentially expressed in PA14/pAtvR and PA14/pJN105
| Function and PA14 locus | PAO1 locus | Gene | Fold change in expression |
|---|---|---|---|
| Nitrate reductase | |||
| PA14_13750 | PA3877 | narK1 | 3.62 |
| PA14_13770 | PA3876 | narK2 | 5.44 |
| PA14_13780 | PA3875 | narG | 10.23 |
| PA14_13800 | PA3874 | narH | 10.67 |
| PA14_13810 | PA3873 | narJ | 9.09 |
| PA14_13830 | PA3872 | narI | 9.61 |
| PA14_13840 | PA3871 | 4.34 | |
| PA14_13850 | PA3870 | moaA | 2.71 |
| Nitrite reductase | |||
| PA14_06650 | PA0509 | nirN | 5.80 |
| PA14_06660 | PA0510 | nirE | 9.51 |
| PA14_06670 | PA0511 | nirJ | 7.20 |
| PA14_06680 | PA0512 | nirH | 5.86 |
| PA14_06690 | PA0513 | nirG | 5.05 |
| PA14_06700 | PA0514 | nirL | 4.49 |
| PA14_06710 | PA0515 | nirD | 3.80 |
| PA14_06720 | PA0516 | nirF | 3.23 |
| PA14_06730 | PA0517 | nirC | 3.93 |
| PA14_06740 | PA0518 | nirM | 4.58 |
| PA14_06750 | PA0519 | nirS | 3.23 |
| PA14_06790 | PA0521 | nirO | 2.41 |
| PA14_06770 | PA0520 | nirQ | 2.82 |
| Nitric oxide reductase | |||
| PA14_06810 | PA0523 | norC | 6.12 |
| PA14_06830 | PA0524 | norB | 7.44 |
| Nitrous oxide reductase | |||
| PA14_20190 | PA3393 | nosD | 4.02 |
| PA14_20200 | PA3392 | nosZ | 7.53 |
| Arginine metabolism | |||
| PA14_68330 | PA5171 | arcA | 2.29 |
| PA14_68340 | PA5172 | arcB | 4.34 |
| PA14_68350 | PA5173 | arcC | 5.42 |
| QS regulated | |||
| PA14_36330 | PA2193 | hcnA | 2.01 |
| PA14_36320 | PA2194 | hcnB | 3.19 |
| PA14_36310 | PA2195 | hcnC | 4.46 |
| PA14_16250 | PA3724 | lasB | 2.23 |
| PA14_19100 | PA3479 | rhlA | 2.60 |
| Phenazine biosynthesis | |||
| PA14_09400 | PA4217 | phzS | 3.70 |
| PA14_09410 | PA4216 | phzG1 | 7.16 |
| PA14_09420 | PA4215 | phzF1 | 4.71 |
| PA14_09440 | PA4214 | phzE1 | 5.88 |
| PA14_09450 | PA4213 | phzD1 | 6.38 |
| PA14_09460 | PA4212 | phzC1 | 9.14 |
| PA14_09470 | PA4211 | phzB1 | 9.95 |
| PA14_09480 | PA4210 | phzA1 | 6.11 |
| PA14_09490 | PA4209 | phzM | 2.69 |
| PA14_39880 | PA1905 | phzG2 | 3.97 |
| PA14_39890 | PA1904 | phzF2 | 4.71 |
| PA14_39910 | PA1903 | phzE2 | 5.38 |
| PA14_39925 | PA1902 | phzD2 | 6.52 |
| PA14_39945 | PA1901 | phzC2 | 5.42 |
| PA14_39960 | PA1900 | phzB2 | 6.57 |
| PA14_39970 | PA1899 | phzA2 | 3.55 |
| Redox related | |||
| PA14_01490 | PA0122 | rahU | 2.10 |
| PA14_09150 | PA4236 | katA | 2.33 |
| Type VI secretion systems | |||
| PA14_00820 | PA0070 | tagQ1 | 2.09 |
| PA14_01030 | PA0085 | hcp1 | 2.11 |
| PA14_44290 | PA1656 | hsiA2 | 2.06 |
| PA14_43040 | PA1657 | hsiB2 | 3.27 |
| PA14_43030 | PA1658 | hsiC2 | 3.00 |
| PA14_43020 | PA1659 | 2.46 | |
| PA14_43000 | PA1660 | hsiG2 | 2.58 |
| PA14_42990 | PA1661 | hsiH2 | 2.48 |
| PA14_42980 | PA1662 | clpV2 | 2.50 |
| PA14_42970 | PA1663 | sfa2 | 2.35 |
| PA14_42950 | PA1665 | fha2 | 3.68 |
| PA14_42940 | PA1666 | lip2.1 | 2.76 |
| PA14_42920 | PA1667 | hsiJ2 | 2.10 |
| PA14_42910 | PA1668 | dotU2 | 2.74 |
| PA14_42900 | PA1669 | icmF2 | 2.19 |
| PA14_34020 | PA2368 | hsiF3 | 60.50 |