Table 2.
Characteristics of the InDel markers including their chromosome locations and their annotations
| Genes | Sequence | Size | Tm | Position | Annotation |
|---|---|---|---|---|---|
| (Chromosome; Mb) | |||||
| 1gAP006530 | F: ACCCCCAGCATCTCCTCGTC | 261 | 55 | 1; 15.0 | intergenics |
| R: ACTGGGCCAGGGCTGAGTCT | (close to OsS01g26950) | ||||
| 1gAP003855 | F: CTTGCGCGGTCGAGTAGACG | 289 | 55 | 1; 25.7 | intergenics |
| R: AGCGGTGTGATCCCCAAAGG | (close to Os01g45310) | ||||
| Os01g48270 | F: AGGCAAGCATTGGAAATAGG | 210 | 55 | 1; 27.6 | AAA-type ATPase family |
| R: TGGTAACAATCGCACCTTGA | protein, putative, expressed | ||||
| Os01g57310 | F: CGATGAACTGGAACACCATGA | 290 | 57 | 1; 33.1 | rp1-like protein, putative, expressed |
| R: GGCAACAGAGCCATACTTTGA | |||||
| Os01g72550 | F: CCG AGT TCA GGC GAG TGT TC | 382 | 55 | 1; 42.4 | OsCML19-Calmodulin- |
| R: TCA TTG TTT GGC ACT CCT CG | Related calcium sensor protein | ||||
| Os02g48500 | F: AGGCAATGGAGCACCAAGTT | 277 | 57 | 2; 29.6 | hypothetical protein |
| R:TTGTACTGTTGGGGTTGGCA | |||||
| Os04g22440 | F: ATCCTCGATGACACCGACCT | 352 | 57 | 4; 12.6 | hypothetical protein |
| R: TGCCCTTGGTAACTTGCTTCT | |||||
| Os04g30430 | F: GCTTCTCCTGGTTGTATGC | 163 | 52 | 4: 18.0 | nuclear transport factor 2, |
| R:AAAATAGGGAGGCAGATAGAC | putative, expressed | ||||
| 4gAL606639 | F: TTTTGTGAAACTTGACCCTC | 112 | 52 | 4; 28.8 | intergenics |
| R: GCGTCCATGTCTTTATTGTG | (close to OS04g48750) | ||||
| 5gAC137622 | F: CTCGCTGTTTACTGACTGG | 155 | 52 | 5; 13.8 | intergenics |
| R: TTTGATGTACTGCCTGCTCT | |||||
| Os06g11600 | F: TGCTGTGGGGCCTCTAATGA | 211 | 55 | 6; 6.1 | growth regulator related |
| R: TGAGACAACACCCACCCACC | protein, putative, expressed | ||||
| Os06g51110 | F: GAT GGC AAA CAC CAA CAG GA | 340 | 55 | 6; 30.9 | cyclin, putative, |
| R: GAG GGT TGG TTT GCC AGT GT | expressed | ||||
| Os07g26740 | F: GGGGAAGCGTCGTTATGACC | 259 | 55 | 7; 15.4 | 60 S ribosomal protein L44, |
| R: CCTTGATCGGGTGCTGAGAG | putative, expressed | ||||
| Os07g027000 | F: GCGCACTGTGATGCAAGATG | 358 | 55 | 7; 15.6 | retrotransposon protein |
| R: GACCTTGTCGGGATGTGCAG | putative, unclassified | ||||
| Os07g27590 | F: CTGTTGAAGGGGAGGAGCGT | 244 | 55 | 7;16.1 | retrotransposon protein, |
| R: TACGGTGCACTTCGGTCGTC | putative, unclassified | ||||
| Os08g41690 | F: TGCGAGGATGGAGTTCTTGA | 250 | 55 | 8; 26.3 | expressed protein |
| R: CAATCCCTTCACCAGAAGGAC | |||||
| Os08g41950 | F: GTC AGC CTG AAG TGC AGC AG | 418 | 55 | 8; 26.5 | OsMADS7 - MADS-box |
| R: CGG CAC CAC ATA TAT GCC AC | family with MIKCc type- | ||||
| box, expressed | |||||
| Os09g08960 | F: GGACTGAAAACACGATCGCA | 280 | 55 | 9; 4.7 | retrotransposon protein, |
| R: TTTTGGGGATCATCATCGACT | putative, unclassified | ||||
| Os11g41390 | F: AAGAAAAATATCTATTGAGGAGTG | 178 | 52 | 11; 24.3 | hypothetical protein |
| R: GGAGGACCATAAATGACGG |