Table 2.
Gene Clusters Found Enriched within EBRs
| Chr | EBR Analysis |
Gene Analysis |
||||
|---|---|---|---|---|---|---|
| Start (bp) | End (bp) | EBR Type | Gene Family | ID | Distance EBR Start (kbp) | |
| 2 | 25,510,722 | 25,615,814 | Rodentia specific | Calycin | Lcn5: Lipocalin 5 | −2.8 |
| Lcn6: Lipocain 6 | −21.6 | |||||
| Lcn10: Lipocain 10 | −27.5 | |||||
| Lcn13: Lipocalin 13 | −44.8 | |||||
| Lcn14: Lipocalin 14 | −81.8 | |||||
| 26,481,623 | 26,536,687 | Mouse specific | Lcn4: Lipocalin 4 | −41.6 | ||
| 11 | 32,168,628 | 32,232,893 | Mouse specific | Hemoglobin | Hba-X: Hemoglobin X | −7.7 |
| Hba-a1 and Hba-a2: Hemoglobin alpha-like embryonic chain in Hba complex | −14.9 | |||||
| Hbq1b: Hemoglobin, theta 1B | −18.3 | |||||
| Hbq1a: Hemoglobin, theta 1A | −31.4 | |||||
| 13 | 48,534,105 | 48,607,849 | Muridae specific | Krueppel associated box | Zfp169: zinc finger protein 169 | −50.4 |
| 17 | 15,680,043 | 15,701,318 | Muridae specific | Prdm9: PR domain containing 9 | −11.3 | |
| X | 20,596,836 | 20,735,882 | Mouse specific | Zfp182: zinc finger protein 182 | −9.2 | |
| 20,596,836 | 20,735,882 | Mouse specific | Zfp300: zinc finger protein 300 | −59.4 | ||
| 20,596,836 | 20,735,882 | Mouse specific | Ssxa1: Synovial sarcoma, X member A, breakpoint 1 | −96.1 | ||
Note.—For each EBR included in the table we have specified the mouse chromosome (chr), the start and end position (in bp), the corresponding gene enrichment cluster or gene family name, the ID and the distance of the gene start from the up-stream region of the EBR (in kbp).