Table 2. Oligonucleotide primers used in this study.
Primers | Sequence (5'-3') |
---|---|
Gene deletions | |
KP1_4563-A | ATAAGAATGCGGCCGCGGCGATGCTGATTTATGC |
KP1_4563-B | CCCTCTGCAACCATTCGCGTTTGCTTTCGATGGACTT |
KP1_4563-C | AAGTCCATCGAAAGCAAACGCGAATGGTTGCAGAGGG |
KP1_4563-D | ATAAGAATGCGGCCGCTCGGGGCGATCAGTATGG |
Complementation of mutant | |
KP1_4563-HB-KpnI-F | CGGGGTACCAGGAGGAATTCACCATGCTTTCCACCATAAAA |
KP1_4563-HB-SalI-R | ACGCGTCGACTTATTTAGACAGCTCGGC |
qRT-PCR | |
KP1_4563-RT-F | CGGTATGCTCTCCCTGGTC |
KP1_4563-RT-R | TATTTAGACAGCTCGGCGGTC |
LacZ fusion | |
KP1_4563-LacZ-F | CGCGGATCCCGATGCTGATTTATGCCAC |
KP1_4563-LacZ-R | GGAAGATCTATACCGGCAGCTGCGAGTAA |
Protein production | |
KP1_5071-CRP-P-F | GCGGGATCCATGGTGCTTGGCAAACCG |
KP1_5071-CRP-P-R | GCGAAGCTTTTAACGGGTGCCGTAGACG |
EMSA | |
KP1_4563-EMSA-F | CGATGCTGATTTATGCCAC |
KP1_4563-EMSA-R | ATACCGGCAGCTGCGAGTAA |
KP1_16S -EMSA-F | CGGTCTGTCAAGTCGGATGTG |
KP1_16S -EMSA-R | CGGAAGCCACGCCTCAAG |
DNase I footprinting | |
KP1_4563-FP-F | ATGTGATACCCCCTTTCAGAAG |
KP1_4563-FP-R | ATACCGGCAGCTGCGAGTAA |
Amplification of the KP1_4563 coding region together with AGGAGG, which is a ribosome binding site (underlined) consensus sequence, and AATTCACC (italic), a spacer. Bold letters indicate the respective restriction enzyme site in the primer.