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. 2017 Jul 21;12(7):e0180666. doi: 10.1371/journal.pone.0180666

Table 2. Oligonucleotide primers used in this study.

Primers Sequence (5'-3')
Gene deletions
KP1_4563-A ATAAGAATGCGGCCGCGGCGATGCTGATTTATGC
KP1_4563-B CCCTCTGCAACCATTCGCGTTTGCTTTCGATGGACTT
KP1_4563-C AAGTCCATCGAAAGCAAACGCGAATGGTTGCAGAGGG
KP1_4563-D ATAAGAATGCGGCCGCTCGGGGCGATCAGTATGG
Complementation of mutant
KP1_4563-HB-KpnI-F CGGGGTACCAGGAGGAATTCACCATGCTTTCCACCATAAAA
KP1_4563-HB-SalI-R ACGCGTCGACTTATTTAGACAGCTCGGC
qRT-PCR
KP1_4563-RT-F CGGTATGCTCTCCCTGGTC
KP1_4563-RT-R TATTTAGACAGCTCGGCGGTC
LacZ fusion
KP1_4563-LacZ-F CGCGGATCCCGATGCTGATTTATGCCAC
KP1_4563-LacZ-R GGAAGATCTATACCGGCAGCTGCGAGTAA
Protein production
KP1_5071-CRP-P-F GCGGGATCCATGGTGCTTGGCAAACCG
KP1_5071-CRP-P-R GCGAAGCTTTTAACGGGTGCCGTAGACG
EMSA
KP1_4563-EMSA-F CGATGCTGATTTATGCCAC
KP1_4563-EMSA-R ATACCGGCAGCTGCGAGTAA
KP1_16S -EMSA-F CGGTCTGTCAAGTCGGATGTG
KP1_16S -EMSA-R CGGAAGCCACGCCTCAAG
DNase I footprinting
KP1_4563-FP-F ATGTGATACCCCCTTTCAGAAG
KP1_4563-FP-R ATACCGGCAGCTGCGAGTAA

Amplification of the KP1_4563 coding region together with AGGAGG, which is a ribosome binding site (underlined) consensus sequence, and AATTCACC (italic), a spacer. Bold letters indicate the respective restriction enzyme site in the primer.