Table 1. Proteins with differential levels during diurnal light cycle that are related to photosynthesis and carbon metabolism.
The class of each protein was k-means clustered based on the dynamic protein levels measured at eight time points.
| KEGG Pathway | Accession | Gene Name | Class | Coverage | # Unique Peptides | # AAs | MW [kDa] | Calc. pI |
|---|---|---|---|---|---|---|---|---|
| Photosynthesis | B4FRF2 | oxygen-evolving enhancer protein 1 | 1 | 32.17 | 2 | 230 | 24.47 | 5.02 |
| B6T3B2 | oxygen-evolving enhancer protein 1 | 1 | 25.53 | 2 | 329 | 34.50 | 5.64 | |
| B4F9R9 | uncharacterized LOC100191684 | 3 | 20.60 | 2 | 335 | 35.06 | 5.66 | |
| B4G259 | oxygen-evolving enhancer protein 3–1, chloroplastic | 3 | 7.37 | 2 | 217 | 23.12 | 9.77 | |
| B6SRD4 | oxygen-evolving enhancer protein 3–1, chloroplastic-like | 3 | 7.55 | 2 | 212 | 22.67 | 9.8 | |
| B6T0C6 | ATP synthase delta chain | 3 | 8.00 | 2 | 250 | 26.66 | 4.78 | |
| C0P6Z6 | ATP synthase delta chain | 3 | 8.00 | 2 | 250 | 26.70 | 4.78 | |
| P48187 | PSII 43 kDa protein (psbC) | 4 | 6.55 | 3 | 473 | 51.87 | 7.03 | |
| B6SP61 | ferredoxin-like | 6 | 25.81 | 4 | 155 | 16.14 | 5.85 | |
| B4FT19 | oxygen-evolving enhancer protein 3 | 7 | 7.79 | 2 | 231 | 25.33 | 7.8 | |
| B6SRI3 | photosystem I reaction center subunit III | 7 | 8.00 | 2 | 225 | 23.79 | 9.36 | |
| B6TKD1 | photosystem II 22 kDa protein | 7 | 9.96 | 3 | 271 | 28.36 | 9.09 | |
| P04967 | PSI P700 apoprotein A2 (psaB) | 7 | 3.54 | 2 | 735 | 82.61 | 7.15 | |
| P48183 | photosystem II protein D1 (psbA) | 7 | 6.80 | 2 | 353 | 38.99 | 5.36 | |
| P48184 | photosystem II protein D2 (psbD) | 7 | 6.52 | 2 | 353 | 39.58 | 5.95 | |
| P48186 | ATPase subunit I (atpF) | 7 | 13.66 | 3 | 183 | 20.97 | 9.23 | |
| Q6WFB1 | photosystem II subunit PsbS1 (psbs1) | 7 | 10.19 | 3 | 265 | 27.70 | 9.09 | |
| Carbon fixation in photosynthetic organisms | C0P3W9 | phosphoenolpyruvate carboxykinase | 1 | 6.45 | 4 | 667 | 73.40 | 6.93 |
| Q9SLZ0 | phosphoenolpyruvate carboxykinase | 1 | 4.35 | 3 | 666 | 73.27 | 7.03 | |
| P00874 | rbcL | 4 | 21.01 | 10 | 476 | 52.67 | 6.8 | |
| P04711 | pep1 | 4 | 23.09 | 20 | 970 | ##### | 6.1 | |
| Q43267 | pep1 | 4 | 24.12 | 21 | 970 | ##### | 6.04 | |
| B6SLL8 | malate dehydrogenase, cytoplasmic | 6 | 5.12 | 2 | 332 | 35.50 | 6.09 | |
| C4IZW9 | mdh5 | 6 | 18.37 | 6 | 332 | 35.57 | 6.09 | |
| B4G1J6 | uncharacterized LOC100274515 | 7 | 20.61 | 2 | 131 | 13.82 | 8.97 | |
| B6STH5 | phosphoglycerate kinase | 7 | 16.67 | 7 | 480 | 49.84 | 6.46 | |
| Starch and sucrose metabolism | Q8L5G8 | uncharacterized LOC542510 | 1 | 6.29 | 3 | 509 | 54.78 | 6.49 |
| B4FQC6 | uncharacterized LOC100382805 | 4 | 2.59 | 2 | 617 | 67.50 | 5.99 | |
| B6SWT4 | glucose-6-phosphate isomerase | 4 | 2.60 | 2 | 616 | 67.47 | 5.99 | |
| C0PAU7 | uncharacterized LOC100382805 | 4 | 2.60 | 2 | 616 | 67.39 | 5.81 | |
| Q8L5H0 | sus2 | 4 | 3.34 | 3 | 809 | 91.87 | 6.61 | |
| B5AMJ8 | uncharacterized LOC100285259 | 7 | 4.53 | 3 | 838 | 94.39 | 7.28 | |
| B6TCZ8 | AGP2 | 7 | 4.63 | 2 | 518 | 57.41 | 6.83 | |
| O48900 | gss1 | 7 | 3.44 | 2 | 698 | 75.50 | 6.39 | |
| P31927 | sps1 | 7 | 7.21 | 6 | 1068 | ##### | 6.67 | |
| Citrate cycle (TCA cycle) | B4F8B8 | uncharacterized LOC100272834 | 1 | 5.57 | 2 | 341 | 37.52 | 6.33 |
| B6TS21 | succinyl-CoA ligase beta-chain | 1 | 26.54 | 3 | 422 | 45.17 | 6.32 | |
| C0P3W W9 | phosphoenolpyruvate carboxykinase (LOC541622) | 1 | 6.45 | 4 | 667 | 73.40 | 6.93 | |
| Q9SLZ0 | phosphoenolpyruvate carboxykinase (LOC541622) | 1 | 4.35 | 3 | 666 | 73.27 | 7.03 | |
| C0PD24 | uncharacterized LOC100383847 | 4 | 7.69 | 3 | 416 | 47.73 | 6.32 | |
| C0PDA6 | uncharacterized LOC100279871 | 5 | 4.82 | 2 | 498 | 53.55 | 7.42 | |
| B6SLL8 | malate dehydrogenase, cytoplasmic | 6 | 5.12 | 2 | 332 | 35.50 | 6.09 | |
| C4IZW9 | mdh5 | 6 | 18.37 | 6 | 332 | 35.57 | 6.09 | |
| Q9ZQY3 | pyruvate dehydrogenase 2 (pdh2) | 6 | 5.90 | 2 | 373 | 39.79 | 5.76 | |
| B4F9M9 | uncharacterized LOC100191657 | 7 | 12.75 | 2 | 400 | 45.40 | 6.39 | |
| B4G249 | uncharacterized LOC100274592 (gpm541) | 7 | 14.08 | 3 | 412 | 46.19 | 6.55 | |
| B6SRL2 | aconitase 2 (aco2) | 7 | 6.85 | 4 | 905 | 98.88 | 6.48 | |
| B6TD54 | uncharacterized LOC100282948 | 7 | 4.50 | 2 | 422 | 46.61 | 5.72 | |
| B6TQ36 | pyruvate dehydrogenase E1 component subunit beta | 7 | 5.05 | 2 | 396 | 42.29 | 7.02 | |
| C0HER4 | uncharacterized LOC100304315 | 7 | 10.07 | 2 | 685 | 74.27 | 6.13 | |
| C0PFT6 | uncharacterized LOC100383412 | 7 | 3.07 | 2 | 814 | 92.22 | 7.18 |