Table 1.
Primer sequences and efficiency used for RT-PCR
Gene | Forward primer | Reverse primer | Slope | Amplification | Efficiency |
---|---|---|---|---|---|
α-MHC | CCAAACGAGTTCCGGCCT | TGCCCAAACCAAAGAGAATGA | −2.999 | 2.15 | 1.15 |
β-MHC | GAATGGCTTCTAGTCCCA | TCATCTTCTCACTAAGGGCT | −3.009 | 2.14 | 1.14 |
BNP | CAGAAGCTGCTGGAGCTGATAAG | TGTAGGGCCTTGGTCCTTTG | −3.33 | 1.99 | 0.995 |
CYP1B1 | CAGAAGCTGGAGCTGATAAG | TGTAGGGCCTTGGTCCTTTG | −3.35 | 1.98 | 0.985 |
GST-A1 | TTGATGTTCCAGCAAGTGCC | CACCAGCTTCATCCCATCAAT | −3.25 | 2.03 | 1.03 |
HO-1 | ATGGCCTCCCTGTACCACATC | TGTTGCGCTCAATCTCCTCCT | −3.01 | 2.14 | 1.14 |
β-actin | CCAGATCATGTTTGAGACCTTCAA | GTGGTACGACCAGAGGCATACA | −3.00 | 2.15 | 1.15 |
The Ct slope method was used to measure the efficiency of the RT-PCR. This method involves generating a dilution series of the target template and determining the Ct value for each dilution. A plot of Ct versus log cDNA concentration range (with four concentration points at 60, 6,0.6, and 0.06 ng/µl) was made. Exponential amplification was calculated using the equation A = 10(−1/slope). Efficiency was calculated using the equation Ex = 10(−1/slope) − 1