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. Author manuscript; available in PMC: 2017 Dec 15.
Published in final edited form as: Arch Biochem Biophys. 2016 Oct 18;612:46–56. doi: 10.1016/j.abb.2016.10.011

Table 1.

Structural Statistics for the MDH•6DHNAD, LDH•6DHNAD and PpRen•NADPH complexes

MDH with 6DHNAD LDH with 6DHNAD PpRen with NADPH
Data collectiona
Beamline 9-2 (Stanford) 9-2 (Stanford) 21-ID-F (APS)
Wavelength (Å) 0.9795 0.9795 0.9787
Space group P212121 P21 P21
Cell dimensions; a, b, c (Å), β (°) 77.5, 83.8, 89.3, 90 63.6, 126.1, 84.2, 99.9 63.4, 71.0, 74.8, 107.8
Resolution range (Å)b 39.40 – 1.75 (1.78 – 1.75) 39.41 – 1.86 (1.89 – 1.86) 46.02 – 2.09 (2.16 – 2.09)
Rmergec 0.075 (0.548) 0.066 (0.574) 0.071 (0.357)
Total observations 286641 (14580) 373153 (16868) 119090 (10,650)
Total unique observations 58987 (3036) 108172 (5057) 37,538 (3,197)
Mean ((I) / σ(I)) 14.3 (2.6) 11.8 (2.0) 11.2 (2.6)
Completeness (%) 99.2 (94.0) 98.7 (93.2) 98.0 (96.0)
Redundancy 4.9 (4.8) 3.4 (3.3) 3.2 (2.9)
Wilson B-factor (Å2) 14.41 19.98 24.99
Refinement
Resolution (Å) 38.76 – 1.75 (1.81 – 1.75) 39.41 – 1.86 (1.93 – 1.86)1.996) 46.02 – 2.09 (2.16 – 2.09)
Rcrystd 0.1545 (0.1915) 0.1698 (0.2762) 0.157 (0.196)
Rfree 0.1809 (0.2173) 0.2104 (0.3050) 0.203 (0.287)
Total unique observations 58918 (5659) 107967 (10506) 37198 (3037)
No. of non-H atoms in model:
    Protein 4381 10053 4958
    Ligand 88 245 172
    Water 473 506 198
rms deviation bonds (Å) 0.010 0.012 0.012
rms deviation angles (°) 1.103 1.17 1.46
Overall mean B-factor (Å2) 17.34 26.32 35.39
Ramachandran plot analysise
    Favored region 99.0 97.4 98.0
    Allowed region 1.0 2.6 2.0
    Outlier region 0.0 0.0 0.0
a

data indexed and scaled with XDS

b

values in paretheses are for the highest resolution shell

c

Rmerge = Σh|Ih – <I>|/ΣhIh, where Ih is the intensity of reflection h, and <I> is the mean intensity of all symmetry-related reflections

d

Rcryst = Σ||Fo| – |Fc||/Σ|Fo|, Fo and Fc are observed and calculated structure factor amplitudes. Five percent of the reflections were reserved for the calculation of Rfree.

d

Calculated with Molprobity