Table 3b.

Comparison of anchor residue preference identified with automatic approach with those documented in SYFPEITHI database.

		SYFPEITHI motif					Automatically derived motif
System	Allele	P2	P3	P5	P6	P9	P2	P3	P5	P6	P9
HLA	A*0201	LM				VL	LM				VL
	A*3001	YF				L		KR			K
	A*3201						MLTV				FIW
	A*6802						TV				V
	B*0702	P				L	P				FML
	B*0801		K						HKR	F	FIML
	B*1501						MLQ				FY
	B*1503	QK				FY	KMQ				FY
	B*2705	R				FL	R	FLMWT			FIHKMLRY
	B*3501	P				YFMLI	P				FMY
	B*5101	APG				VI	P				IV
	B*5301	P				WFL	P				W
	B“5401	P					P				A
	B*5801	AST				FW	AST				w
H-2	Db			N		LIVM			N		IML
	Dd		P			LFI	G	P			FIMLRTV
	Kd	YF				LIV	Y				HIL
	Kk	E				IV	E				I