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. Author manuscript; available in PMC: 2017 Jul 24.

Published in final edited form as: Data Knowl Eng. 2014 Sep 18;94(B):189–201. doi: 10.1016/j.datak.2014.09.002

Table 2.

Comparison with baseline measures.

Method	NLM2007 dataset			L1000 dataset

	R_μ	P_μ	F_μ	R_μ	P_μ	F_μ
Our method	0.54	0.32	0.40	0.56	0.29	0.38
NER only	0.35	0.20	0.25	0.36	0.19	0.25
NER + graph-mining	0.36	0.19	0.25	0.38	0.18	0.24