Table 6.
FNT subfamily | UniProt IDa (Organism) | Cytoplasmic slit residuesb | CHI/CVV valuec |
---|---|---|---|
NirC-α | A3WW31(Nitrobacter sp.) A4BNG3 (Nitrococcus mobilis) D5BVC1 (Nitrosococcus halophilus) I4EJX4 (Nitrolancea hollandica) Q82WJ4 (Nitrosomonas europaea) |
YMANV | CHI: +3.1 |
HSC | F0JF84 (Desulfovibrio desulfuricans) | LLVTL | CHI: +14.9 |
NirC-γ | S4D5T6, V7ZKG7 (Enterococcus faecalis) S4EBH9, T2NT11 (Enterococcus faecium) T0U7W5 (Enterococcus sp.) T4JYM3 (Peptoclostridium difficile) U5SBH7 (Carnobacterium inhibens) V5XL10 (Enterococcus mundtii) and 41 more |
LLGNV | CVV: 497 Ǻ3 |
Unclassified | I0JHL8 (Halobacillus halophilus) K2GJH2 (Salimicrobium jeotgali) L5N8D2 (Halobacillus sp.) Q8ES73 (Oceanobacillus iheyensis) |
YLFNI | CVV: 620 Ǻ3 |
aThe unique UniProt Accession ID is given
bThe five residues that form cytoplasmic slit in the open state of the channel. They correspond to L79 from TM2a, L89 and F90 from Ω-loop and N172 and V175 from TM4 of the formate channel (PDB ID: 3KCU). Residues shown in bold will become part of the cytoplasmic slit in the open state when the Ω-loop undergoes conformational changes
cCalculation of Cumulative Hydropathy Index (CHI) and Cumulative vdw Volume (CVV) are described in the text