Table 1.
Species-specific consensus sequence determined from 456 viral genomes
| Virus | Number of viral genomes used for consensus sequence | Virus | Number of viral genomes used for consensus sequence |
|---|---|---|---|
| CHIKV | 188 | BFV | 4 |
| ONNV | 5 | BEBV | 2 |
| WEEV | 12 | FMV | 3 |
| VEEV | 140 | HJV | 4 |
| EEEV | 14 | WHAV | 2 |
| SINV | 23 | MIDV | 1 |
| RRV | 14 | NDUV | 2 |
| SFV | 14 | SESV | 2 |
| MAYV | 3 | SPDV | 15 |
| GETV | 8 |
Clustal alignment of available genomic sequences was performed for each Alphavirus
A consensus sequence was determined for each viral species using Bioedit software
Consensus sequences were then aligned using CHIKV LR2006 sequence as a ruler guide