Table 1.
Alignment statistics for MBD-seq and MeDIP-seq data aligned with QuasR/Rbowtie
| Assay | Total Reads | Mean | Left Aligned Reads | Right Aligned Reads | Aligned Pairs | % Alignment | % Concordant Pairs | % Multiple Alignments |
|---|---|---|---|---|---|---|---|---|
| MBD-seq_MAM | 19326475 | 19362935 (s=2190907) | 17752215 | 17182900 | 16532136 | 90.4 | 77.2 | 17.3 |
| 17183342 | 11232684 | 13684791 | 10716433 | 83.2 | 65.1 | 16.9 | ||
| 18574542 | 12078897 | 14763677 | 11533871 | 82.9 | 64.1 | 18.9 | ||
| 22367381 | 12517428 | 15279227 | 11971937 | 82.9 | 65.1 | 17.4 | ||
|
| ||||||||
| MBD-seq_Saline | 21574301 | 19163209 (s=2175500) | 19856902 | 19101503 | 18374213 | 90.3 | 76.6 | 17.9 |
| 19463667 | 17918551 | 17310277 | 16668391 | 90.5 | 77.1 | 17.8 | ||
| 19327057 | 17776414 | 17179842 | 16528874 | 90.4 | 77.1 | 17.5 | ||
| 16287811 | 12130976 | 14835641 | 11579746 | 82.8 | 64.1 | 19.1 | ||
|
| ||||||||
| MeDIP-seq_MAM | 16117023 | 18560572 (s=2730060) | 11773923 | 14349366 | 10906813 | 81.1 | 58.7 | 18.1 |
| 17183342 | 12533063 | 17183342 | 11589324 | 80.9 | 58.9 | 16.7 | ||
| 18574542 | 13522594 | 16470305 | 12494126 | 80.7 | 58.2 | 17.9 | ||
| 22367381 | 20017729 | 19023865 | 17846973 | 87.3 | 69.9 | 16.9 | ||
|
| ||||||||
| MeDIP-seq_Saline | 17597846 | 17275587 (s=988655) | 12804209 | 15605425 | 11845928 | 80.7 | 58.6 | 17.4 |
| 16034400 | 11686974 | 14260000 | 10809308 | 80.9 | 58.4 | 17.8 | ||
| 17077133 | 12361734 | 15033414 | 11364634 | 80.2 | 57.2 | 16.9 | ||
| 18392967 | 16476887 | 15600987 | 14597428 | 87.2 | 69.1 | 17.2 | ||