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. Author manuscript; available in PMC: 2018 Sep 1.
Published in final edited form as: Hum Mutat. 2017 Mar 15;38(9):1251–1258. doi: 10.1002/humu.23185

Fig. 5. Predicting causal SNPs within the RFX6 prostate cancer locus.

Fig. 5

deltaSVM using a gkm-SVM trained on a prostate cancer cell line LNCaP (A) can identify the causal SNP (red) from among flanking SNPs (grey), but a gkm-SVM trained on melanocytes (B) or HepG2 (C) cannot. Deepsea predictions include LNCaP cells in the training set but do not correctly identify the validated SNP (D).