Table I.

AUROC and AUPRC for all methods on both eQTL challenge tasks: predicting expression and predicting expression change.

	Predicting expression		Predicting expression change
Method	AUROC	AUPRC	AUROC	AUPRC
1-1	0.716044	0.329400	0.550820	0.305258
2-1	0.723336	0.385369	0.477301	0.234723
3-1	0.652051	0.242830	0.511197	0.284360
4-1	0.807690	0.528288	0.655261	0.452561
5-1 gkm-SVM DHS	0.693357	0.369462	0.626850	0.409730
5-2 gkm-SVM MPRA	0.578095	0.189516	0.577220	0.369083
6-1,4	0.786722	0.461099	0.561953	0.345064
7-1	0.670681	0.437487	0.562854	0.431639
gkm-SVM DHS+MPRA	0.680054	0.377978	0.619772	0.458197