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. 2017 Jul 26;8:1389. doi: 10.3389/fmicb.2017.01389

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Copyright © 2017 Adhikari and Kwon.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Heatmap of normalized OTU table consisting of Lactobacillus species only. Heatmap was constructed with make_otu_heatmap.py option of QIIME with log transformation where all zeros were set to a small value (1/2 the smallest non-zero entry), and data was translated to non-negative after log transformation, and num_otu_hits was set to 0. The abundance of Lactobacillus species decreases as the intensity of color decreases from green to yellow. Total bacterial cells from cecal lumen (T-CL). MRS-recovered cells from cecal lumen (M-CL), cecal mucosa (M-CM), and ileal mucosa (M-IM).